AtomSets/Carbohydrate - Revision history

AngelHerraez: table redesign

2023-04-24T18:02:42Z

table redesign

Show changes

AngelHerraez: update list

2023-04-24T14:38:02Z

update list

AngelHerraez: Monosaccharides: SOL and SOE added

2011-08-30T15:46:41Z

Monosaccharides: SOL and SOE added

AngelHerraez: /* 'carbohydrate' atom set */

2011-07-04T18:19:19Z

‎'carbohydrate' atom set

AngelHerraez: adding NDG, AMU

2011-07-04T16:21:09Z

adding NDG, AMU

AngelHerraez at 19:53, 29 June 2011

2011-06-29T19:53:24Z

AngelHerraez at 19:48, 29 June 2011

2011-06-29T19:48:31Z

AngelHerraez: /* Cathegorized */

2011-06-29T19:41:43Z

‎Cathegorized

AngelHerraez at 18:54, 29 June 2011

2011-06-29T18:54:29Z

AngelHerraez: carbohydrate atom set

2011-06-29T18:35:43Z

carbohydrate atom set

New page

== 'carbohydrate' atom set ==

[A2G] = N-acetyl-alpha-D-galactosamine = GalNAc = 2-(acetylamino)-2-deoxy-alpha-D-galactopyranose (see also NGA)

[AFL] = <fucose> obsolete, replaced with FUL

[AGC] = <glucose> obsolete, replaced with GLC

[AHR] = alpha-L-arabinofuranose

[ARA] = alpha-L-arabinopyranose

[ARB] = beta-L-arabinopyranose

[BDF] = beta-D-fructopyranose (see also FRU)

[BDR] = beta-D-ribofuranose

[BGC] = beta-D-glucopyranose (see also GLC)

[BMA] = beta-D-mannopyranose (see also MAN)

[CBI] = cellobiose

[CT3] = beta-cellotriose

[CTR] = cellotriose

[CTT] = cellotetraose

[FCA] = alpha-D-fucose (see also FCB, FUC, FUL)

[FCB] = beta-D-fucose (see also FCA, FUC, FUL)

[FRU] = beta-D-fructofuranose (see also BDF)

[FUC] = alpha-L-fucose (see also FCA, FCB, FUL)

[FUL] = beta-L-fucose (see also FCA, FCB, FUC)

[GAL] = beta-D-galactopyranose (see also GLA)

[GCU] = alpha-D-glucopyranuronic acid (glucuronic acid)

[GLA] = alpha-D-galactopyranose (see also GAL)

[GLB] = <galactose> obsolete, replaced with GAL

[GLC] = alpha-D-glucopyranose (see also BGC)

[GUP] = alpha-L-gulopyranose

[LAT] = beta-lactose

[LXC] = beta-L-xylopyranose

[MAB] = mannobiose

[MAL] = maltose

[MAN] = alpha-D-mannopyranose (see also BMA)

[MLR] = maltotriose

[MTL] = D-mannitol

[MTT] = maltotetraose

[NAG] = N-acetylglucosamine = GlcNAc = 2-(acetylamino)-2-deoxy-beta-D-glucopyranose)

[NAN] = <sialic> obsolete, replaced with SIA

[NGA] = N-acetyl-beta-D-galactosamine = GalNAc = 2-(acetylamino)-2-deoxy-beta-D-galactopyranose (see also A2G)

[RAA] = <rhamnose> obsolete, replaced with RAM

[RAM] = alpha-L-rhamnose

[RHA] = 6-deoxy-mannose-1'-phosphate

[RIB] = alpha-D-ribofuranose

[RIP] = beta-D-ribopyranose

[SIA] = 5-N-acetyl-alpha-D-neuraminic acid (see also SLB)

[SLB] = 5-N-acetyl-beta-D-neuraminic acid (see also SIA)

[SOR] = D-glucitol = D-sorbitol

[SUC] = sucrose

[TRE] = trehalose

[XYL] = D-xylitol

[XYP] = beta-D-xylopyranose

[XYS] = alpha-D-xylopyranose

@@ Line 1: / Line 1: @@
 = 'carbohydrate' atom set =
-''(Updated to Jmol 12.0.47 and 12.1.51)''
+''(Updated to Jmol 16.1.9)''
 Atoms are included in this set according to the name of the residue (group) they belong to:
@@ Line 13: / Line 13: @@
 [AHR] = alpha-L-arabinofuranose
 [AMU] = N-acetyl-beta-muramic acid
@@ Line 57: / Line 59: @@
 [GUP] = alpha-L-gulopyranose
 [LAT] = beta-lactose
@@ Line 97: / Line 101: @@
 [SLB] = 5-N-acetyl-beta-D-neuraminic acid  (see also SIA)
 [SOR] = D-glucitol = D-sorbitol
@@ Line 135: / Line 143: @@
    </tr>
    <tr>
-     <th rowspan="2">galactose</th>
+     <th rowspan="3">galactose</th>
-     <td rowspan="2">pyranose</td>
+     <td rowspan="3">pyranose</td>
      <td>&alpha;-D-Gal<sub>p</sub></td>
      <td>[GLA]</td>
@@ Line 143: / Line 151: @@
      <td>&beta;-D-Gal<sub>p</sub></td>
      <td>[GAL]</td>
    </tr>
    <tr>
@@ Line 238: / Line 250: @@
      <td>&alpha;-L-sorbopyranose</td>
      <td>[SOE]</td>
    </tr>
 </table>
@@ Line 297: / Line 315: @@
 == References ==
-* RCSB PDB [http://ligand-expo.rcsb.org/ld-search.html `Ligand ExpoÂ´ Chemical Component Search Tools].
+* RCSB PDB [http://ligand-expo.rcsb.org/ld-search.html `Ligand Expo´ Chemical Component Search Tools]

@@ Line 227: / Line 227: @@
      <td>&alpha;-L-Rha<sub>p</sub></td>
      <td>[RAM]</td>
    </tr>
 </table>

← Older revision		Revision as of 18:19, 4 July 2011
Line 1:		Line 1:
	= 'carbohydrate' atom set =		= 'carbohydrate' atom set =
		+	''(Updated to Jmol 12.0.47 and 12.1.51)''
		+
	Atoms are included in this set according to the name of the residue (group) they belong to:		Atoms are included in this set according to the name of the residue (group) they belong to:

@@ Line 11: / Line 11: @@
 [AHR] = alpha-L-arabinofuranose
 [ARA] = alpha-L-arabinopyranose
@@ Line 55: / Line 57: @@
 [LAT] = beta-lactose
 [LXC] = beta-L-xylopyranose
@@ Line 70: / Line 74: @@
 [MTT] = maltotetraose
-[NAG] = N-acetylglucosamine = GlcNAc = 2-(acetylamino)-2-deoxy-beta-D-glucopyranose)
+[NAG] = N-acetyl-beta-D-glucosamine = &beta;-GlcNAc = 2-(acetylamino)-2-deoxy-beta-D-glucopyranose)  (see also NDG)
 [NAN] = <sialic> obsolete, replaced with SIA
 [NGA] = N-acetyl-beta-D-galactosamine = GalNAc = 2-(acetylamino)-2-deoxy-beta-D-galactopyranose  (see also A2G)
@@ Line 223: / Line 229: @@
 === Amino sugars ===
-[NAG] = &beta;-GlcNAc = N-acetylglucosamine = 2-(acetylamino)-2-deoxy-&beta;-D-glucopyranose
 [A2G] = &alpha;-GalNAc = N-acetyl-&alpha;-D-galactosamine = 2-(acetylamino)-2-deoxy-&alpha;-D-galactopyranose
 [NGA] = &beta;-GalNAc = N-acetyl-&beta;-D-galactosamine = 2-(acetylamino)-2-deoxy-&beta;-D-galactopyranose
 === Sugar alcohols ===
@@ Line 244: / Line 249: @@
 [RHA] = 6-deoxy-mannose-1'-phosphate
 === Disaccharides ===

← Older revision		Revision as of 19:53, 29 June 2011
Line 1:		Line 1:
	= 'carbohydrate' atom set =		= 'carbohydrate' atom set =
		+	Atoms are included in this set according to the name of the residue (group) they belong to:
		+
	== Alphabetic ==		== Alphabetic ==

← Older revision		Revision as of 19:48, 29 June 2011
Line 269:		Line 269:

	[CTT] = cellotetraose = [β-D-Glc<sub>p</sub>(1->4)]<sub>4</sub>		[CTT] = cellotetraose = [β-D-Glc<sub>p</sub>(1->4)]<sub>4</sub>
		+
		+	== References ==
		+	* RCSB PDB [http://ligand-expo.rcsb.org/ld-search.html `Ligand ExpoÂ´ Chemical Component Search Tools].

@@ Line 102: / Line 102: @@
 == Cathegorized ==
 === Monosaccharides ===
 === Disaccharides ===
 [CBI] = cellobiose = [&beta;-D-Glc<sub>p</sub>(1->4)]<sub>2</sub>
 [MAB] = mannobiose = [&beta;-D-Man<sub>p</sub>(1->4)]<sub>2</sub>
-[MAL] = maltose = [&alpha;-D-Glc<sub>p</sub>(1->4)]<sub>2</sub>
+[LBT] = alpha-lactose = &beta;-D-Gal<sub>p</sub>(1->4)&alpha;-D-Glc<sub>p</sub>
 [SUC] = sucrose = &beta;-D-Fru<sub>f</sub>(2->1)&alpha;-D-Glc<sub>p</sub>
 === Trisaccharides ===
-[CT3] = beta-cellotriose = [&beta;-D-Glc<sub>p</sub>(1->4)]<sub>3</sub>
+[MLR] = maltotriose = [&alpha;-D-Glc<sub>p</sub>(1->4)]<sub>3</sub>
 [CTR] = cellotriose = [&beta;-D-Glc<sub>p</sub>(1->4)]<sub>2</sub>&alpha;-D-Glc<sub>p</sub>
-[MLR] = maltotriose = [&alpha;-D-Glc<sub>p</sub>(1->4)]<sub>3</sub>
+[CT3] = beta-cellotriose = [&beta;-D-Glc<sub>p</sub>(1->4)]<sub>3</sub>
 === Tetrasaccharides ===
 [CTT] = cellotetraose = [&beta;-D-Glc<sub>p</sub>(1->4)]<sub>4</sub>

@@ Line 1: / Line 1: @@
-== 'carbohydrate' atom set ==
+= 'carbohydrate' atom set =
 [A2G] = N-acetyl-alpha-D-galactosamine = GalNAc = 2-(acetylamino)-2-deoxy-alpha-D-galactopyranose  (see also NGA)
@@ Line 98: / Line 99: @@
 [XYS] = alpha-D-xylopyranose