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File formats/Sample xjvxl - Revision history
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AngelHerraez: example of XML-JVXL format
2010-01-19T20:04:17Z
<p>example of XML-JVXL format</p>
<p><b>New page</b></p><div>An example of a file with XJVXL (XML variant of Jmol voxel) format:<br />
<br />
<pre><br />
<?xml version="1.0"?><br />
<jvxl version="2.1" Jmol version="Jmol 11.9.7_dev 2009-09-20 12:13"><br />
<br />
<jvxlFileTitle><br />
#created by Jmol Version 11.9.7_dev 2009-09-20 12:13 on Mon Oct 26 10:55:54 CDT 2009<br />
boundbox corners {-4.6571665 -4.3279686 -2.95} {4.6571665 4.3279686 2.95} #MEP<br />
</jvxlFileTitle><br />
<br />
<jvxlVolumeData origin="{-4.6571665 -4.3279686 -2.95}"><br />
<jvxlVolumeVector type="0" count="28" vector="{0.3449753 0.0 0.0}"><br />
</jvxlVolumeVector><br />
<br />
<jvxlVolumeVector type="1" count="26" vector="{0.0 0.34623748 0.0}"><br />
</jvxlVolumeVector><br />
<br />
<jvxlVolumeVector type="2" count="18" vector="{0.0 0.0 0.3470588}"><br />
</jvxlVolumeVector><br />
</jvxlVolumeData><br />
<br />
<jvxlSurfaceSet count="2"><br />
<jvxlSurface><br />
<jvxlSurfaceInfo<br />
asXML="true"<br />
cutoff="0.0"<br />
isCutoffAbsolute="true"<br />
pointsPerAngstrom="2.8987584"<br />
isXLowToHigh="false"<br />
nBytesUncompressedColorData="1008"<br />
nBytesData="1008"<br />
colorMapped="true"<br />
plane="{0.0 1.0 0.0 0.0}"<br />
precisionColor="true"<br />
contoured="true"<br />
nContours="9"<br />
contourValues="[-3.4028235E38, -0.05, -0.0375, -0.025, -0.012499999, 1.0E-4, 0.012499999, 0.025000002, 3.4028235E38]"<br />
contourColors="[xff6000] [xffe000] [xf0f000] [x80ff00] [x20ff00] [x00ff60] [x00ffc0] [x00c0ff] [x0060ff]"<br />
dataMinimum="-0.44280344"<br />
dataMaximum="0.3196677"<br />
valueMappedToRed="-0.05"<br />
valueMappedToBlue="0.05"<br />
jmolVersion="Jmol 11.9.7_dev 2009-09-20 12:13"><br />
</jvxlSurfaceInfo><br />
<jvxlSurfaceCommand><br />
isosurface plane {0 1 0 0} map contour mep dots;<br />
</jvxlSurfaceCommand><br />
<jvxlSurfaceState><br />
isosurface ID "isosurface1" noFill mesh dots notFrontOnly contourlines fullylit<br />
</jvxlSurfaceState><br />
<jvxlSurfaceData><br />
<jvxlColorData data="W~9 X~6 YXYX~5 W~13 XXY~5 XXWWWWVWWWXXYZ[[ZYXXWWWVVVVWWXZ!^^!ZXWWV~6 WX[_ff_[XWVVVVUUUUVWZb||bZWVU~5 TTTUV!nn!VUTTTUUTTSSRQPOMMOPQRSSTTTSRQPMIA**AIMPQRSTSSQPNJE;##;EJNPQSSSRQOLHC<44<CHLOQRSSRPNKGB=99=BGKNPRSSQPNKGB>;;>BGKNPQSSQPNKGB>;;>BGKNPQSSRPNKGB=99=BGKNPRSSRQOLHC<44<CHLOQRSSSQPNJE;##;EJNPQSSTSRQPMIA**AIMPQRSTTTSSRQPOMMOPQRSSTTUUTTTUV!nn!VUTTTU~5 VWZb||bZWVUUUUVVVVWX[_ff_[XWV~6 WWXZ!^^!ZXWWVVVVWWWXXYZ[[ZYXXWWWVWWWWXXY~5 XXW~8 XXXYYXXXW~9 X~7 W~4 4;E>QM`ary,=@!PxZ.Z.Px@!,=ry`aQME>;4)4E]%Q*[{{[*Q%]E4)s#5Q$eagRRgae$Q5#s^et8noMcffcMon8te^ABKd@W,ykky,W@dKBAwnjs>KH^||^HK>sjnwN6xc]%gboobg%]cx6NzQy=NSK0]]0KSN=yQzLjwi3mpC%%Cpm3iwjL{.zF/kG-##-Gk/Fz.{WU3<ZoO,@@,OoZ<3UW=1[R^luMDDMul^R[1=0yA06Fk2%%2kF60Ay00yA06Fk2%%2kF60Ay0=1[R^luMDDMul^R[1=WU3<ZoO,@@,OoZ<3UW{.zF/kG-##-Gk/Fz.{Ljwi3mpC%%Cpm3iwjLzQy=NSK0]]0KSN=yQzN6xc]%gboobg%]cx6Nwnjs>KH^||^HK>sjnwABKd@W,ykky,W@dKBA^et8noMcffcMon8te^s#5Q$eagRRgae$Q5#s)4E]%Q*[{{[*Q%]E4)4>May=!x..x!=yaM>4;EQ`r,@PZZP@,r`QE;"><br />
</jvxlColorData><br />
</jvxlSurfaceData><br />
</jvxlSurface><br />
<br />
<jvxlSurface><br />
<jvxlSurfaceInfo<br />
asXML="true"<br />
cutoff="0.0"<br />
isCutoffAbsolute="true"<br />
pointsPerAngstrom="2.8987584"<br />
isXLowToHigh="false"<br />
nBytesUncompressedColorData="1008"<br />
nBytesData="1008"<br />
colorMapped="true"<br />
plane="{0.0 1.0 0.0 0.0}"<br />
precisionColor="true"<br />
contoured="true"<br />
nContours="9"<br />
contourValues="[-3.4028235E38, -0.05, -0.0375, -0.025, -0.012499999, 1.0E-4, 0.012499999, 0.025000002, 3.4028235E38]"<br />
contourColors="[xff6000] [xffe000] [xf0f000] [x80aa00] [x20aa00] [x00aa60] [x00ffc0] [x00c0ff] [x0060ff]"<br />
dataMinimum="-0.44280344"<br />
dataMaximum="0.3196677"<br />
valueMappedToRed="-0.05"<br />
valueMappedToBlue="0.05"<br />
jmolVersion="Jmol 11.9.7_dev 2009-09-20 12:13"><br />
</jvxlSurfaceInfo><br />
<jvxlSurfaceCommand><br />
isosurface plane {0 1 0 0} map contour mep;<br />
</jvxlSurfaceCommand><br />
<jvxlSurfaceState><br />
isosurface ID "isosurface1" noFill mesh dots notFrontOnly contourlines fullylit<br />
</jvxlSurfaceState><br />
<jvxlSurfaceData><br />
<jvxlColorData data="W~9 X~6 YXYX~5 W~13 XXY~5 XXWWWWVWWWXXYZ[[ZYXXWWWVVVVWWXZ!^^!ZXWWV~6 WX[_ff_[XWVVVVUUUUVWZb||bZWVU~5 TTTUV!nn!VUTTTUUTTSSRQPOMMOPQRSSTTTSRQPMIA**AIMPQRSTSSQPNJE;##;EJNPQSSSRQOLHC<44<CHLOQRSSRPNKGB=99=BGKNPRSSQPNKGB>;;>BGKNPQSSQPNKGB>;;>BGKNPQSSRPNKGB=99=BGKNPRSSRQOLHC<44<CHLOQRSSSQPNJE;##;EJNPQSSTSRQPMIA**AIMPQRSTTTSSRQPOMMOPQRSSTTUUTTTUV!nn!VUTTTU~5 VWZb||bZWVUUUUVVVVWX[_ff_[XWV~6 WWXZ!^^!ZXWWVVVVWWWXXYZ[[ZYXXWWWVWWWWXXY~5 XXW~8 XXXYYXXXW~9 X~7 W~4 4;E>QM`ary,=@!PxZ.Z.Px@!,=ry`aQME>;4)4E]%Q*[{{[*Q%]E4)s#5Q$eagRRgae$Q5#s^et8noMcffcMon8te^ABKd@W,ykky,W@dKBAwnjs>KH^||^HK>sjnwN6xc]%gboobg%]cx6NzQy=NSK0]]0KSN=yQzLjwi3mpC%%Cpm3iwjL{.zF/kG-##-Gk/Fz.{WU3<ZoO,@@,OoZ<3UW=1[R^luMDDMul^R[1=0yA06Fk2%%2kF60Ay00yA06Fk2%%2kF60Ay0=1[R^luMDDMul^R[1=WU3<ZoO,@@,OoZ<3UW{.zF/kG-##-Gk/Fz.{Ljwi3mpC%%Cpm3iwjLzQy=NSK0]]0KSN=yQzN6xc]%gboobg%]cx6Nwnjs>KH^||^HK>sjnwABKd@W,ykky,W@dKBA^et8noMcffcMon8te^s#5Q$eagRRgae$Q5#s)4E]%Q*[{{[*Q%]E4)4>May=!x..x!=yaM>4;EQ`r,@PZZP@,r`QE;"><br />
</jvxlColorData><br />
</jvxlSurfaceData><br />
</jvxlSurface><br />
</jvxlSurfaceSet><br />
<br />
</jvxl><br />
<br />
</pre></div>
AngelHerraez