Inlined CML File - Revision history

AngelHerraez: add to Category

2010-11-23T20:39:39Z

add to Category

NicolasVervelle: Fix

2007-01-09T10:04:55Z

Fix

NicolasVervelle at 07:07, 7 June 2006

2006-06-07T07:07:13Z

NicolasVervelle at 07:00, 7 June 2006

2006-06-07T07:00:52Z

Rzepa: /* Inlined CML File */

2006-06-07T06:12:18Z

‎Inlined CML File

Rzepa at 06:09, 7 June 2006

2006-06-07T06:09:04Z

New page

== Inlined CML File ==

<jmol>
<jmolApplet>
<size>150</size>
<color>red</color>
<inlineContents><cml:molecule xmlns:cml="http://www.xml-cml.org/schema/cml2/core"
title="chair.mol">
<cml:metadataList title="generated automatically from Openbabel">
<cml:metadata name="dc:creator" content="OpenBabel version 1-100.1"/>
<cml:metadata name="dc:description" content="Conversion of legacy filetype to CML"/>
<cml:metadata name="dc:identifier" content="Unknown"/>
<cml:metadata name="dc:content"/>
<cml:metadata name="dc:rights" content="unknown"/>
<cml:metadata name="dc:type" content="chemistry"/>
<cml:metadata name="dc:contributor" content="unknown"/>
<cml:metadata name="dc:creator" content="Openbabel V1-100.1"/>
<cml:metadata name="dc:date" content="Tue Jun 06 19:11:23 BST 2006"/>
<cml:metadata name="cmlm:structure" content="yes"/>
</cml:metadataList>
<cml:atomArray atomID="a1 a2 a3 a4 a5 a6 a7 a8 a9 a10 a11 a12 a13 a14 a15 a16 a17 a18" elementType="C C C C C C H H H H H H H H H H H H" formalCharge="0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0" x3="1.688100 2.148400 2.936100 2.092700 1.632900 0.853200 2.580700 1.089700 1.257800 2.779100 3.872500 3.241300 1.200500 2.683500 0.995700 2.524000 0.564200 -0.091900" y3="2.157200 3.621700 3.912600 3.576900 2.112000 1.810200 1.488700 1.971100 4.292700 3.847400 3.305300 4.986100 4.246700 3.770000 1.892800 1.442600 0.732200 2.403900" z3="-3.019300 -2.979700 -1.694200 -0.455700 -0.489800 -1.777800 -3.065200 -3.943000 -3.028200 -3.872700 -1.684400 -1.668500 -0.422400 0.471400 0.400200 -0.429400 -1.803100 -1.787800"/>
<cml:bondArray atomRef1="a1 a1 a1 a1 a2 a2 a2 a3 a3 a3 a4 a4 a4 a5 a5 a5 a6 a6" atomRef2="a2 a6 a7 a8 a3 a9 a10 a4 a11 a12 a5 a13 a14 a6 a15 a16 a17 a18" order="1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1"/>
</cml:molecule>
</inlineContents>
</jmolApplet>
</jmol>

This inline example is of a datafile in XML format, but fully carried in a declared namespace of xmlns:cml="http://www.xml-cml.org/schema/cml2/core. In theory, this XML should be processable separately from e.g. the <jmol> default namespace.</jmol>

← Older revision		Revision as of 20:39, 23 November 2010
Line 54:		Line 54:

	Both of these examples display if (and only if) the CML contents is put inside <code><![CDATA[</code> and <code>]]></code> tags.		Both of these examples display if (and only if) the CML contents is put inside <code><![CDATA[</code> and <code>]]></code> tags.
		+
		+	[[Category:Pages Using Jmol MW Extension]]

← Older revision		Revision as of 07:07, 7 June 2006
Line 55:		Line 55:
	</jmol>		</jmol>

−	~~Neither~~ of these examples ~~currently displays~~.	+	Both of these examples display if (and only if) the CML contents is put inside <code><![CDATA[</code> and <code>]]></code> tags.

@@ Line 5: / Line 5: @@
 <size>150</size>
 <color>red</color>
-     <inlineContents><![CDATA[<cml:molecule xmlns:cml="http://www.xml-cml.org/schema/cml2/core"
+     <inlineContents><![CDATA[<cml:molecule xmlns:cml="http://www.xml-cml.org/schema/cml2/core" title="chair.mol">
 <cml:metadataList title="generated automatically from Openbabel">
 <cml:metadata name="dc:creator" content="OpenBabel version 1-100.1"/>
@@ Line 34: / Line 33: @@
 <size>150</size>
 <color>orange</color>
-     <inlineContents><![CDATA[&lt;cml:molecule xmlns:cml="http://www.xml-cml.org/schema/cml2/core"
+     <inlineContents><![CDATA[&lt;cml:molecule xmlns:cml="http://www.xml-cml.org/schema/cml2/core" title="chair.mol"&gt;
 &lt;cml:metadataList title="generated automatically from Openbabel"&gt;
 &lt;cml:metadata name="dc:creator" content="OpenBabel version 1-100.1"/&gt;

@@ Line 5: / Line 5: @@
 <size>150</size>
 <color>red</color>
-     <inlineContents><cml:molecule xmlns:cml="http://www.xml-cml.org/schema/cml2/core"
+     <inlineContents><![CDATA[<cml:molecule xmlns:cml="http://www.xml-cml.org/schema/cml2/core"
   title="chair.mol">
 <cml:metadataList title="generated automatically from Openbabel">
@@ Line 21: / Line 21: @@
 <cml:atomArray atomID="a1 a2 a3 a4 a5 a6 a7 a8 a9 a10 a11 a12 a13 a14 a15 a16 a17 a18" elementType="C C C C C C H H H H H H H H H H H H" formalCharge="0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0" x3="1.688100 2.148400 2.936100 2.092700 1.632900 0.853200 2.580700 1.089700 1.257800 2.779100 3.872500 3.241300 1.200500 2.683500 0.995700 2.524000 0.564200 -0.091900" y3="2.157200 3.621700 3.912600 3.576900 2.112000 1.810200 1.488700 1.971100 4.292700 3.847400 3.305300 4.986100 4.246700 3.770000 1.892800 1.442600 0.732200 2.403900" z3="-3.019300 -2.979700 -1.694200 -0.455700 -0.489800 -1.777800 -3.065200 -3.943000 -3.028200 -3.872700 -1.684400 -1.668500 -0.422400 0.471400 0.400200 -0.429400 -1.803100 -1.787800"/>
 <cml:bondArray atomRef1="a1 a1 a1 a1 a2 a2 a2 a3 a3 a3 a4 a4 a4 a5 a5 a5 a6 a6" atomRef2="a2 a6 a7 a8 a3 a9 a10 a4 a11 a12 a5 a13 a14 a6 a15 a16 a17 a18" order="1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1"/>
-</cml:molecule>
+</cml:molecule>]]>
 </inlineContents>
    </jmolApplet>
@@ Line 34: / Line 34: @@
 <size>150</size>
 <color>orange</color>
-     <inlineContents>&lt;cml:molecule xmlns:cml="http://www.xml-cml.org/schema/cml2/core"
+     <inlineContents><![CDATA[&lt;cml:molecule xmlns:cml="http://www.xml-cml.org/schema/cml2/core"
   title="chair.mol"&gt;
 &lt;cml:metadataList title="generated automatically from Openbabel"&gt;
@@ Line 50: / Line 50: @@
 &lt;cml:atomArray atomID="a1 a2 a3 a4 a5 a6 a7 a8 a9 a10 a11 a12 a13 a14 a15 a16 a17 a18" elementType="C C C C C C H H H H H H H H H H H H" formalCharge="0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0" x3="1.688100 2.148400 2.936100 2.092700 1.632900 0.853200 2.580700 1.089700 1.257800 2.779100 3.872500 3.241300 1.200500 2.683500 0.995700 2.524000 0.564200 -0.091900" y3="2.157200 3.621700 3.912600 3.576900 2.112000 1.810200 1.488700 1.971100 4.292700 3.847400 3.305300 4.986100 4.246700 3.770000 1.892800 1.442600 0.732200 2.403900" z3="-3.019300 -2.979700 -1.694200 -0.455700 -0.489800 -1.777800 -3.065200 -3.943000 -3.028200 -3.872700 -1.684400 -1.668500 -0.422400 0.471400 0.400200 -0.429400 -1.803100 -1.787800"/&gt;
 &lt;cml:bondArray atomRef1="a1 a1 a1 a1 a2 a2 a2 a3 a3 a3 a4 a4 a4 a5 a5 a5 a6 a6" atomRef2="a2 a6 a7 a8 a3 a9 a10 a4 a11 a12 a5 a13 a14 a6 a15 a16 a17 a18" order="1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1"/&gt;
-&lt;/cml:molecule&gt;
+&lt;/cml:molecule&gt;]]>
 </inlineContents>
    </jmolApplet>

← Older revision		Revision as of 06:12, 7 June 2006
Line 26:		Line 26:
	</jmol>		</jmol>

−	This inline example is of a datafile in XML format, but fully carried in a declared namespace of xmlns:cml="http://www.xml-cml.org/schema/cml2/core. In theory, this XML should be processable separately from e.g. the <jmol> ~~default namespace~~.</jmol>	+	This inline example is of a datafile in XML format, but fully carried in a declared namespace of xmlns:cml="http://www.xml-cml.org/schema/cml2/core. In theory, this XML should be processable separately from e.g. the jmol default namespace. Does Mediawiki honour such namespaces?
		+
		+	The next example is the same datafile, but fully escaped.
		+
		+	<jmol>
		+	<jmolApplet>
		+	<size>150</size>
		+	<color>orange</color>
		+	<inlineContents><cml:molecule xmlns:cml="http://www.xml-cml.org/schema/cml2/core"
		+	title="chair.mol">
		+	<cml:metadataList title="generated automatically from Openbabel">
		+	<cml:metadata name="dc:creator" content="OpenBabel version 1-100.1"/>
		+	<cml:metadata name="dc:description" content="Conversion of legacy filetype to CML"/>
		+	<cml:metadata name="dc:identifier" content="Unknown"/>
		+	<cml:metadata name="dc:content"/>
		+	<cml:metadata name="dc:rights" content="unknown"/>
		+	<cml:metadata name="dc:type" content="chemistry"/>
		+	<cml:metadata name="dc:contributor" content="unknown"/>
		+	<cml:metadata name="dc:creator" content="Openbabel V1-100.1"/>
		+	<cml:metadata name="dc:date" content="Tue Jun 06 19:11:23 BST 2006"/>
		+	<cml:metadata name="cmlm:structure" content="yes"/>
		+	</cml:metadataList>
		+	<cml:atomArray atomID="a1 a2 a3 a4 a5 a6 a7 a8 a9 a10 a11 a12 a13 a14 a15 a16 a17 a18" elementType="C C C C C C H H H H H H H H H H H H" formalCharge="0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0" x3="1.688100 2.148400 2.936100 2.092700 1.632900 0.853200 2.580700 1.089700 1.257800 2.779100 3.872500 3.241300 1.200500 2.683500 0.995700 2.524000 0.564200 -0.091900" y3="2.157200 3.621700 3.912600 3.576900 2.112000 1.810200 1.488700 1.971100 4.292700 3.847400 3.305300 4.986100 4.246700 3.770000 1.892800 1.442600 0.732200 2.403900" z3="-3.019300 -2.979700 -1.694200 -0.455700 -0.489800 -1.777800 -3.065200 -3.943000 -3.028200 -3.872700 -1.684400 -1.668500 -0.422400 0.471400 0.400200 -0.429400 -1.803100 -1.787800"/>
		+	<cml:bondArray atomRef1="a1 a1 a1 a1 a2 a2 a2 a3 a3 a3 a4 a4 a4 a5 a5 a5 a6 a6" atomRef2="a2 a6 a7 a8 a3 a9 a10 a4 a11 a12 a5 a13 a14 a6 a15 a16 a17 a18" order="1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1"/>
		+	</cml:molecule>
		+	</inlineContents>
		+	</jmolApplet>
		+	</jmol>
		+
		+	Neither of these examples currently displays.