Difference between revisions of "Copying and pasting scripts"
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Jmol [[Scripting|scripts]] are groups of Jmol [http://chemapps.stolaf.edu/jmol/docs/ commands] that, when executed in Jmol, produce a desired molecular scene. Sometimes it is useful to obtain a script from one place, and run it in Jmol somewhere else. For example, certain molecular scenes are generated much more easily in [http://firstglance.jmol.org FirstGlance in Jmol] than elsewhere (e.g. showing contacts to a ligand). Such a scene can be reproduced in [http://proteopedia.org Proteopedia.Org] by generating the state script in FirstGlance, and executing it in Proteopedia's molecular Scene Authoring Tools (see [http://www.proteopedia.org/wiki/index.php/Help:Copying_FirstGlance_Scenes_into_Proteopedia instructions]). | Jmol [[Scripting|scripts]] are groups of Jmol [http://chemapps.stolaf.edu/jmol/docs/ commands] that, when executed in Jmol, produce a desired molecular scene. Sometimes it is useful to obtain a script from one place, and run it in Jmol somewhere else. For example, certain molecular scenes are generated much more easily in [http://firstglance.jmol.org FirstGlance in Jmol] than elsewhere (e.g. showing contacts to a ligand). Such a scene can be reproduced in [http://proteopedia.org Proteopedia.Org] by generating the state script in FirstGlance, and executing it in Proteopedia's molecular Scene Authoring Tools (see [http://www.proteopedia.org/wiki/index.php/Help:Copying_FirstGlance_Scenes_into_Proteopedia instructions]). | ||
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| + | [http://www.proteopedia.org/wiki/index.php/Java Java] presents some technical obstacles to copying and pasting scripts. Below are described known workarounds. | ||
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| + | ==Applet== | ||
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| + | ==Application== | ||
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| + | (please provide details here) | ||
Revision as of 15:35, 29 September 2011
Jmol scripts are groups of Jmol commands that, when executed in Jmol, produce a desired molecular scene. Sometimes it is useful to obtain a script from one place, and run it in Jmol somewhere else. For example, certain molecular scenes are generated much more easily in FirstGlance in Jmol than elsewhere (e.g. showing contacts to a ligand). Such a scene can be reproduced in Proteopedia.Org by generating the state script in FirstGlance, and executing it in Proteopedia's molecular Scene Authoring Tools (see instructions).
Java presents some technical obstacles to copying and pasting scripts. Below are described known workarounds.
Applet
Application
(please provide details here)
