Difference between revisions of "User:EricMartz"
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| − | I am the main author of [http://firstglance.jmol.org FirstGlance in Jmol], a simple, browser-based tool for molecular visualization adopted by ''[http://www.nature.com/nsmb Nature Structural and Molecular Biology]'', among [http://firstglance.jmol.org/adoption.htm others]. FirstGlance is designed to be useful both to novices and to specialists. It works in all popular browsers and platforms, including Internet Explorer or Firefox on Windows, Safari on Mac OSX, and Mozilla Firefox on linux. A hyperlink to FirstGlance can show any PDB file in one click. 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[http://wonted.cn/www-preziosavideo/index.html www preziosavideo it] [http://basiscugnizzi.romanikki.cn/index.html basi scugnizzi] I am the main author of [http://firstglance.jmol.org FirstGlance in Jmol], a simple, browser-based tool for molecular visualization adopted by ''[http://www.nature.com/nsmb Nature Structural and Molecular Biology]'', among [http://firstglance.jmol.org/adoption.htm others]. FirstGlance is designed to be useful both to novices and to specialists. It works in all popular browsers and platforms, including Internet Explorer or Firefox on Windows, Safari on Mac OSX, and Mozilla Firefox on linux. A hyperlink to FirstGlance can show any PDB file in one click. It is free for all users, and its source code is freely available for others to adapt. |
Key views are shown via one-click links from an always-visible control panel: secondary structure, amino and carboxy termini, general composition, hydrophobic vs. polar regions (or cores, using slab mode), charges, and multiple models when present (NMR). Convenience buttons show or hide ligands or water, toggle slab mode, zoom up/down, and change the background color. Help about each view or operation, including color keys, appears automatically, and is always in view. | Key views are shown via one-click links from an always-visible control panel: secondary structure, amino and carboxy termini, general composition, hydrophobic vs. polar regions (or cores, using slab mode), charges, and multiple models when present (NMR). Convenience buttons show or hide ligands or water, toggle slab mode, zoom up/down, and change the background color. Help about each view or operation, including color keys, appears automatically, and is always in view. | ||
Revision as of 02:23, 11 September 2007
yagir boney james yohoo japan bandiera portoghese xvidcore dll www blue org www alezah com basi musicali con cori gratis www musicascarica com bajor anestesia letale www primaposizione betulla www sigeitalia org yllka black time yamaha 650 dragstar www ryair com bucatini alla molisana www pizzolon com arriva durango... paga o muori www articolo31 com www aironef banda calypso ao vivo zanzara young girls www lopeor com zu atrapartu arte www vernici auto it brazilian affair bruup yugioh www trucoteca warcraft com www laposte net biglietti di auguri matrimonio benny more www avvenire it beautiful aguilera xerostomia x man yaspa black peace bacio saffico carolina amore e ginnastica baywatch girls brother bear xelibri x 8 berthe morisot breas zoo 015 x change peach princess www giochi per anziani it zsnesw basi midi festivalbar 2004 zeze di camargo e luciano yasar ipek yesica toscanini zanichelli ya omry www priscila y sus balas de plata bilboa gollini buoni o cattivi mp3 zarqawi www lane com zennas alterazione genetica biglietti di atalanta bologna www ghironda com www ebay de www rive com ballata notturna ying yang twinz www studiovercelli it zecchino d oro 1998 bring to life amiche in attesa www pubblicherelazioni com ballo del pinguino b u r zecchino d oro cocco e drilli armi contro la legge www regioneabruzzo it busco novia www rosso alice it www minijuego com www game it ze ramalho www perreo com www lidl it www unionhotels it www decapitazione nick berger it almost famous - quasi famosi bus italia www prefettura pavia it www sviluppoitalia it www papa roach com www summerjamboree com www shoshan bofrost yellowcard ocean avenue www arianna w w w scam it www cinziatorrini dyndns tv blackstone and atari wessedorighezzi boobs www gensoftonline com antonia e jane yngwie malmsteen benthos american graffiti b r right bells biagi marco www maggiore it bias elettronica blow my whistle yolanda perez www aioss it biglietti mugello attacco a rommel wrestiling femminile www centocinque it buffoon dance butman ww trenitalia com bando per ristretti www streetstore it anima di clown boxeo tailandes ballata della societa willi pasini psicoterapeuta bily ocean yo la queria zeropositivo fasi www streep tease com x portal benedetta la casa delle play girls wwwdavide it blus brothers soundtrack behetoven black eye peace where is the love www sitinurhaliza com xsat 200 www riviste www sex vnn vn www voices no .html al di là del domani www preziosavideo it basi scugnizzi I am the main author of FirstGlance in Jmol, a simple, browser-based tool for molecular visualization adopted by Nature Structural and Molecular Biology, among others. FirstGlance is designed to be useful both to novices and to specialists. It works in all popular browsers and platforms, including Internet Explorer or Firefox on Windows, Safari on Mac OSX, and Mozilla Firefox on linux. A hyperlink to FirstGlance can show any PDB file in one click. It is free for all users, and its source code is freely available for others to adapt.
Key views are shown via one-click links from an always-visible control panel: secondary structure, amino and carboxy termini, general composition, hydrophobic vs. polar regions (or cores, using slab mode), charges, and multiple models when present (NMR). Convenience buttons show or hide ligands or water, toggle slab mode, zoom up/down, and change the background color. Help about each view or operation, including color keys, appears automatically, and is always in view.
I am the main author of MolviZ.Org featuring molecular structure tutorials. Beginning in July, 2007, it includes Jmol-based tutorials on DNA Structure, Hemoglobin, Lipid Bilayers and Channels, and Collagen (more coming soon). It also has descriptions and links to all of my molecular visualization websites, including all the other items on this page.
I am a co-author for visualization at the ConSurf Server, which automatically colors amino acids in a 3D protein structure by evolutionary conservation. ConSurf is a project of Nir Ben-Tal and coworkers at Tel-Aviv University, Israel. In August, 2006, we enabled ConSurf to display its results in FirstGlance in Jmol. Previously (since it went into service in 2002) ConSurf's only visualization option was Protein Explorer.
I am the author of an Atlas of Macromolecules, a component of Protein Explorer (PE). In May, 2007, I upgraded the Atlas so that every entry can be visualized with FirstGlance in Jmol as well as with PE.
I am the main author of ProteinExplorer.Org (PE), which is built upon MDL Chime. In early June, 2005, I released a new version that exports molecular views in Jmol. PE's Jmol export mechanism uses Chime command scripts (recorded in PE by javascript developed by TimDriscoll) to produce jmol views as close as possible to the Chime views.
The exported molecular views may be accompanied by text entered into HTML forms and shown as slides to illustrate a talk. Examples are at MolSlides.Org.
PE has the capability to export slides with two adjacent molecular views, intended to be the same, one in Chime, and one in Jmol. This is provided to help identify Chime commands that do not yet work in Jmol. Volunteers to help identify these commands are welcome. Just go to ProteinExplorer.Org, generate some views, save them as MolSlides, and export them to both Chime and Jmol.
In the future, I hope to port PE itself to use Jmol instead of Chime, but that will be a large project!
Contact: emartz AT microbio DOT umass DOT edu
Websites not mentioned above:
- Personal Website
- MolVisIndex.Org: World Index of Molecular Visualization Resources (please enter jmol websites here!)
- molvis-list: Molecular visualization email list.
- PDBLite.Org: Simple search for macromolecular structure data (PDB files).
