Borrowed JSmol - Revision history

AngelHerraez: all links to other servers must be of the https form

2017-01-09T10:09:10Z

all links to other servers must be of the https form

AngelHerraez at 20:56, 18 December 2015

2015-12-18T20:56:01Z

AngelHerraez: better section titles

2015-12-18T20:11:23Z

better section titles

AngelHerraez: /* Hosting JSmol pages in a cloud service */

2015-12-18T19:48:10Z

‎Hosting JSmol pages in a cloud service

AngelHerraez: /* Other servers */

2015-12-18T19:45:04Z

‎Other servers

AngelHerraez: Borrowed JSmol

2015-12-18T19:06:15Z

Borrowed JSmol

AngelHerraez: Borrowed JSmol

2015-12-18T17:55:42Z

Borrowed JSmol

AngelHerraez: Borrowed JSmol

2015-12-18T17:44:37Z

Borrowed JSmol

AngelHerraez: Borrowed JSmol (work in progress)

2015-12-17T23:49:49Z

Borrowed JSmol (work in progress)

New page

This page collects methods for displaying structures in JSmol on the web without actually having control of a web server.

== Hosting JSmol pages in a cloud service ==
...

== Display using JSmol of structures uploaded to a cloud service ==
...
=== FigShare ===
...
=== DropBox ===
...
=== JSmol display ===
Display of the molecular structure in a JSmol panel is achieved via this page:
http://chemapps.stolaf.edu/jmol/jmol.php
with a special syntax:

Reference:
[http://molecularmodelingbasics.blogspot.com.es/2015/11/quick-way-to-share-interactive.html Quick way to share interactive molecular structures and animations] by Jan Jensen (licensed under Creative Commons Attribution 4.0)

@@ Line 26: / Line 26: @@
 |-
 ! url for JSmol display
-| {{StOlaf}}jmol.php?source=http://files.figshare.com/1860026/ethen_01oIRC.cml
+| {{StOlaf}}jmol.php?source=https://files.figshare.com/1860026/ethen_01oIRC.cml
 |}
 :''(Thanks to @janhjensen for the tip)''
@@ Line 34: / Line 35: @@
 Once your molecular file has been uploaded to Dropbox, you need to trick the regular link, of the form
-<code>http<span style="color:red">s</span>://www.dropbox.com/s/xxx/file?dl=0</code>
+<code><nowiki>http://www.dropbox.com/s/xxx/file?dl=0</nowiki></code>
 changing it to this form:
-<code><nowiki>http://dl.dropboxusercontent.com/s/xxx/file</nowiki></code>
+<code>http<span style="color:red">s</span>://dl.dropboxusercontent.com/s/xxx/file</code>
 and then append it to the JSmol url:
@@ Line 45: / Line 46: @@
 |-
 ! link to file
-| https://www.dropbox.com/s/t42dx22mxsioja6/ethen_test.xyz?dl=0
+| http://www.dropbox.com/s/t42dx22mxsioja6/ethen_test.xyz?dl=0
 |-
 ! url for JSmol display
-| {{StOlaf}}jmol.php?source=http://dl.dropboxusercontent.com/s/t42dx22mxsioja6/ethen_test.xyz
+| {{StOlaf}}jmol.php?source=https://dl.dropboxusercontent.com/s/t42dx22mxsioja6/ethen_test.xyz
 |}
 :''(Thanks to @janhjensen and @aminophen for the tip)''
@@ Line 62: / Line 64: @@
 Another possible solution is to save a PNG+JMOL file, upload it and then serve that to the StOlaf jmol.php page. That should preserve the whole state of the model.
 == JSmol pages hosted in a cloud service ==

@@ Line 11: / Line 11: @@
 Display of the molecular structure in a JSmol panel is achieved via this page provided by Bob Hanson:
   {{StOlaf}}jmol.php
-with a special syntax in the URL, i.e. you must append the <code>?source=</code> token followed by the url of your molecular file (see examples below).
+with a special syntax in the URL, i.e. you must append the <code>?source=</code> token followed by the url of your molecular file (see examples below, or more details at [[Jmol PHP]]).
 The URL may easily be copied and shared by email, Tweet, blog or any other means to whoever you want to show your molecular model to. Since all data are in public servers and the page uses JSmol/html5, it is most likely that ayone can view it on any platform, without installing or learning any software.

@@ Line 1: / Line 1: @@
 This page collects methods for displaying structures in JSmol on the web without actually having control of a web server.
-== Display using JSmol of structures uploaded to a cloud service ==
+== JSmol displaying structures uploaded to a cloud service ==
 There are 2 components in this approach:
 * where to locate the webpage that embeds the JSmol object (a common resource),
@@ Line 64: / Line 64: @@
-== Hosting JSmol pages in a cloud service ==
+== JSmol pages hosted in a cloud service ==
 Some people have succeeded in uploading all JSmol files + the webpage files to a cloud server like dropbox, in their personal area, and provide a public url link where the pages load with JSmol and models included.
 More details will be provided here in due time.
 ''...pending...''

← Older revision		Revision as of 19:48, 18 December 2015
Line 65:		Line 65:

	== Hosting JSmol pages in a cloud service ==		== Hosting JSmol pages in a cloud service ==
		+	Some people have succeeded in uploading all JSmol files + the webpage files to a cloud server like dropbox, in their personal area, and provide a public url link where the pages load with JSmol and models included.
		+	More details will be provided here in due time.
		+
	''...pending...''		''...pending...''

@@ Line 54: / Line 54: @@
 === Other servers ===
-It may also be possible to use any other web or file server, as long as you can grab a permanent url that directly points to your file.
+It may also be possible to use any other web or file server, as long as you can grab a permanent url that directly points to your file. In case of limitations from the server policies, remember that J(S)mol does not care about the file extension, i.e. you can change it, except when it is a binary file, then a [[Jmol_JavaScript_Object#Reading_binary_files|known binary extension]] must be included.
 === Custom displays via script ===

@@ Line 5: / Line 5: @@
 == Display using JSmol of structures uploaded to a cloud service ==
-...
+There are 2 parts here:
 === FigShare ===
-...
+Once your molecular file has been uploaded to figshare, copy the link to it (it may be in any file format that Jmol accepts, like the most common <code>pdb</code> and <code>mol</code> formats).
 === DropBox ===
-...
+Once your molecular file has been uploaded to Dropbox, you need a trick:
-=== JSmol display ===
-Display of the molecular structure in a JSmol panel is achieved via this page:
+Change the regular link, of the form
- http://chemapps.stolaf.edu/jmol/jmol.php
-with a special syntax:
+<code>http<span style="color:red">s</span>://www.dropbox.com/s/xxx/file?dl=0</code>
-Reference:
+=== Custom displays via script ==
-[http://molecularmodelingbasics.blogspot.com.es/2015/11/quick-way-to-share-interactive.html Quick way to share interactive molecular structures and animations] by Jan Jensen (licensed under Creative Commons Attribution 4.0)
+...