Colors - Revision history

AngelHerraez: redirect broken link and remove old comments

2021-08-10T16:47:27Z

redirect broken link and remove old comments

AngelHerraez: proposal for color change in N and C isotopes

2009-04-18T18:39:51Z

proposal for color change in N and C isotopes

AngelHerraez: demo isotopes color: add natural isotopes

2009-04-18T18:30:36Z

demo isotopes color: add natural isotopes

AngelHerraez: /* Support for isotopes */

2009-04-06T15:57:52Z

‎Support for isotopes

AngelHerraez: /* Support for isotopes */

2007-11-30T09:33:10Z

‎Support for isotopes

AngelHerraez: isotope colors

2007-11-30T09:26:38Z

isotope colors

Pimpim: added documentation sections template

2007-06-06T15:47:16Z

added documentation sections template

NicolasVervelle: Initialization from JmolWiki

2006-03-28T21:16:38Z

Initialization from JmolWiki

New page

=== Default colors used by Jmol ===

Several users have asked about a guide to colors used by Jmol by default.

This documentation is now available on Jmol website [http://www.jmol.org/jscolors/index.en.html here].
Suggestions are welcome for future improvements, via jmol-users mailing list.

The plan is:
* colors for atoms (by element) --done
* colors for chains --done
* colors for groups / residues --done
* alternative color patterns: Jmol, Rasmol, DRuMS --partly done
* anything else?

@@ Line 2: / Line 2: @@
 === Default colors used by Jmol ===
-Several users have asked about a guide to colors used by Jmol by default.
+[http://jmol.sourceforge.net/jscolors/ Documentation on colors in Jmol].
 ==== Support for isotopes ====
@@ Line 47: / Line 37: @@
 ||<div style="background-color:#505050;width:50px;">&nbsp;</div>
 || [x505050] || _13C
-||<div style="background-color:#686868;width:50px;">new</div>
+||<div style="background-color:#686868;width:50px;color:white;">new</div>
 |-
 |<sup>14</sup>C
 ||<div style="background-color:#404040;width:50px;">&nbsp;</div>
 || [x404040] || _14C
-||<div style="background-color:#404040;width:50px;">same</div>
+||<div style="background-color:#404040;width:50px;color:white;">same</div>
 |-
 |'''<sup>14</sup>N'''
 ||<div style="background-color:#3050F8;width:50px;">&nbsp;</div>
 || [x3050F8] || _14N
-||<div style="background-color:#3050F8;width:50px;">same</div>
+||<div style="background-color:#3050F8;width:50px;color:white;">same</div>
 |-
 |<sup>15</sup>N
 ||<div style="background-color:#105050;width:50px;">&nbsp;</div>
 || [x105050] || _15N
-||<div style="background-color:#2137AA;width:50px;">new</div>
+||<div style="background-color:#2137AA;width:50px;color:white;">new</div>
 |}

@@ Line 20: / Line 20: @@
 {|
 |-
-! isotope !! color !! color code !! script syntax
+! isotope !! color !! color code !! script syntax !! proposed color
 |-
 |'''<sup>1</sup>H'''
@@ Line 36: / Line 36: @@
 |<sup>11</sup>C
 ||<div style="background-color:#D8D8D8;width:50px;">&nbsp;</div>
 || [xD8D8D8] || _11C
 |-
 |'''<sup>12</sup>C'''
 ||<div style="background-color:#909090;width:50px;">&nbsp;</div>
 || [x909090] || _12C
 |-
 |<sup>13</sup>C
 ||<div style="background-color:#505050;width:50px;">&nbsp;</div>
 || [x505050] || _13C
 |-
 |<sup>14</sup>C
 ||<div style="background-color:#404040;width:50px;">&nbsp;</div>
 || [x404040] || _14C
 |-
 |'''<sup>14</sup>N'''
 ||<div style="background-color:#3050F8;width:50px;">&nbsp;</div>
 || [x3050F8] || _14N
 |-
 |<sup>15</sup>N
 ||<div style="background-color:#105050;width:50px;">&nbsp;</div>
 || [x105050] || _15N
 |}

@@ Line 21: / Line 21: @@
 |-
 ! isotope !! color !! color code !! script syntax
 |-
 |<sup>2</sup>H
@@ Line 33: / Line 37: @@
 ||<div style="background-color:#D8D8D8;width:50px;">&nbsp;</div>
 || [xD8D8D8] || _11C
 |-
 |<sup>13</sup>C
@@ Line 41: / Line 49: @@
 ||<div style="background-color:#404040;width:50px;">&nbsp;</div>
 || [x404040] || _14C
 |-
 |<sup>15</sup>N

@@ Line 18: / Line 18: @@
 Common isotopes are recognized by Jmol and colored slightly lighter or darker than the element color:
-:.........(color code)......(script syntax)
+{|
-:<sup>2</sup>H => [xFFFFC0]  =>  _2H, D, deuterium
+|-
-:<sup>3</sup>H => [xFFFFA0]  =>  _3H, T, tritium
+! isotope !! color !! color code !! script syntax
-:<sup>11</sup>C => [xD8D8D8] =>  _11C   (added on 29 Nov. 2007)
+|-
-:<sup>13</sup>C => [x505050] =>  _13C
+|<sup>2</sup>H
-:<sup>14</sup>C => [x404040] =>  _14C
+||<div style="background-color:#FFFFC0;width:50px;">&nbsp;</div>
-:<sup>15</sup>N => [x105050] =>  _15N
+|| [xFFFFC0] || _2H, _D, deuterium

@@ Line 18: / Line 18: @@
 Common isotopes are recognized by Jmol and colored slightly lighter or darker than the element color:
-:<sup>2</sup>H = D = deuterium = [xFFFFC0]
+:.........(color code)......(script syntax)
-:<sup>3</sup>H = T = tritium = [xFFFFA0]
+:<sup>2</sup>H => [xFFFFC0]  =>  _2H, D, deuterium
-:<sup>11</sup>C = [xD8D8D8] (added on 29 Nov. 2007)
+:<sup>3</sup>H => [xFFFFA0]  =>  _3H, T, tritium
-:<sup>13</sup>C = [x505050]
+:<sup>11</sup>C => [xD8D8D8] =>  _11C   (added on 29 Nov. 2007)
-:<sup>14</sup>C = [x404040]
+:<sup>13</sup>C => [x505050] =>  _13C
-:<sup>15</sup>N = [x105050]
+:<sup>14</sup>C => [x404040] =>  _14C

← Older revision		Revision as of 09:26, 30 November 2007
Line 13:		Line 13:
	* alternative color patterns: Jmol, Rasmol, DRuMS --partly done		* alternative color patterns: Jmol, Rasmol, DRuMS --partly done
	* anything else?		* anything else?
		+
		+	==== Support for isotopes ====
		+
		+	Common isotopes are recognized by Jmol and colored slightly lighter or darker than the element color:
		+
		+	:<sup>2</sup>H = D = deuterium = [xFFFFC0]
		+	:<sup>3</sup>H = T = tritium = [xFFFFA0]
		+	:<sup>11</sup>C = [xD8D8D8] (added on 29 Nov. 2007)
		+	:<sup>13</sup>C = [x505050]
		+	:<sup>14</sup>C = [x404040]
		+	:<sup>15</sup>N = [x105050]

← Older revision		Revision as of 15:47, 6 June 2007
Line 1:		Line 1:
		+	{{Jmol_Documentation_Sections}}
	=== Default colors used by Jmol ===		=== Default colors used by Jmol ===