Features since version 10 - Revision history

AngelHerraez: features added in Jmol 14.4

2015-10-13T19:59:01Z

features added in Jmol 14.4

AngelHerraez at 11:20, 9 October 2008

2008-10-09T11:20:44Z

AngelHerraez at 11:17, 9 October 2008

2008-10-09T11:17:48Z

AngelHerraez: link to website for list of recent changes

2008-10-09T11:14:07Z

link to website for list of recent changes

Pimpim: added link to changelog on sourceforge website

2007-06-08T16:43:28Z

added link to changelog on sourceforge website

Pimpim: summarized new stuff in version 10.2

2007-06-07T11:51:15Z

summarized new stuff in version 10.2

New page

{{Jmol_Documentation_Sections}}
=== New in version 10.2 ===
* Easier zoom, perspectiveDepth on or off switching
* 'hbonds on' does not calculate hbonds anymore. Instead, use 'hbonds calculate'. This enables the separation of hbonds data present in the pdb file (e.g. calculated by a separate algorithm) and hbond information as calculated by the jmol hbond algorithm.
* extended label formatting options, printing three-letter, one-letter amino acid codes possible, also including all available atom information (e.g. coordinates) in the label.
* the pop-up menu when right-clicking the applet can be disabled with 'set disablePopupMenu TRUE'. The pop-up menu itteself also can be tweaked.
* An advanced selection option based on connectivity is introduced: select connected It can for example select based on the amount of connections an atom has, or to which atom it is connected.
* Default atomype coloring within a running applet can be changed by e.g. 'color hydrogen yellow'. Coloring of specific selections overrides the default coloring, as before.
* Complete control of drawing bonds between (selected) atoms is now possible with the 'connect' command. Drawing of h-bond, double, triple, aromatic bonds is possible.
* orbitals and electron density and other information can now be drawn as isosurface or pmesh.
* advanced polyhedra bonds are introduced.
* The stars command creates better visibility of selected atoms.

[http://www.stolaf.edu/academics/chemapps/jmol/docs/examples-10.2/new.htm click here to see interactive examples]

@@ Line 1: / Line 1: @@
 {{Jmol_Documentation_Sections}}
-A more recent list of changes is compiled in SorceForge project pages, and listed and linked from the Jmol website:
+The latest list of changes is compiled in SorceForge project pages.
 [http://jmol.sourceforge.net/history/ www.jmol.org/history/]
 (see 'History of Changes' section there).
 == New in version 10.2 ==

@@ Line 6: / Line 6: @@
 == New in version 10.2 ==
-[http://www.stolaf.edu/academics/chemapps/jmol/docs/examples-10.2/new.htm click here] for interactive examples of the new features in 10.2
+[http://www.stolaf.edu/academics/chemapps/jmol/docs/examples-10.2/new.htm Click here] for interactive examples of the new features in 10.2
 * Easier <b>zoom</b>, perspectiveDepth on or off switching
-* 'hbonds on' does not calculate hbonds anymore. Instead, use '<b>hbonds calculate</b>'. This enables the separation of hbonds data present in the pdb file (e.g. calculated by a separate algorithm) and hbond information as calculated by the jmol hbond algorithm.
+* 'hbonds on' does not calculate hbonds anymore. Instead, use '<b>hbonds calculate</b>'. This enables the separation of hbonds data present in the pdb file (e.g. calculated by a separate algorithm) and hbond information as calculated by the Jmol hbond algorithm.
-* extended <b>label formatting options</b>, printing three-letter, one-letter amino acid codes possible, also including all available atom information (e.g. coordinates) in the label.
+* Extended <b>label formatting options</b>, printing three-letter, one-letter amino acid codes possible, also including all available atom information (e.g. coordinates) in the label.
-* the <b>pop-up</b> menu when right-clicking the applet can be disabled with 'set disablePopupMenu TRUE'. The pop-up menu itteself also can be tweaked.
+* The <b>pop-up</b> menu when right-clicking the applet can be disabled with 'set disablePopupMenu TRUE'. The pop-up menu itteself also can be tweaked.
 * An advanced selection option based on connectivity is introduced: <b>select connected</b> It can for example select based on the amount of connections an atom has, or to which atom it is connected.
-* <b>Default atomype coloring</b> within a running applet can be changed by e.g. 'color hydrogen yellow'. Coloring of specific selections overrides the default coloring, as before.
+* <b>Default atomtype coloring</b> within a running applet can be changed by e.g. 'color hydrogen yellow'. Coloring of specific selections overrides the default coloring, as before.
-* Complete control of <b>drawing bonds</b> between (selected) atoms is now possible with the 'connect' command. Drawing of h-bond, double, triple, aromatic bonds is possible.
+* Complete control of <b>drawing bonds</b> between (selected) atoms is now possible with the 'connect' command. Drawing of hydrogen bonds, double, triple, aromatic bonds is possible.
-* orbitals and electron density and other information can now be drawn as <b>isosurface</b> or <b>pmesh</b>.
+* Orbitals and electron density and other information can now be drawn as <b>isosurface</b> or <b>pmesh</b>.
-* advanced <b>polyhedra</b> bonds are introduced.
+* Advanced <b>polyhedra</b> bonds are introduced.
 * The <b>stars</b> command creates better visibility of selected atoms.

@@ Line 2: / Line 2: @@
 A more recent list of changes is compiled in SorceForge project pages, and listed and linked from the Jmol website:
-http://jmol.sourceforge.net/history/
+[http://jmol.sourceforge.net/history/ www.jmol.org/history/]
 (see 'History of Changes' section there).

@@ Line 1: / Line 1: @@
 {{Jmol_Documentation_Sections}}
-=== New in version 10.2 ===
+== New in version 10.2 ==
 * Easier <b>zoom</b>, perspectiveDepth on or off switching
 * 'hbonds on' does not calculate hbonds anymore. Instead, use '<b>hbonds calculate</b>'. This enables the separation of hbonds data present in the pdb file (e.g. calculated by a separate algorithm) and hbond information as calculated by the jmol hbond algorithm.
@@ Line 12: / Line 14: @@
 * The <b>stars</b> command creates better visibility of selected atoms.
-[http://www.stolaf.edu/academics/chemapps/jmol/docs/examples-10.2/new.htm click here to see interactive examples]