AngelHerraez: Elsevier journals using Jmol applet

2012-10-12T22:22:03Z

Elsevier journals using Jmol applet

AngelHerraez: adding Elsevier

2012-09-10T17:45:46Z

adding Elsevier

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== Elsevier journals using Jmol in articles ==

(soon to be filled in)

← Older revision		Revision as of 22:22, 12 October 2012
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	== Elsevier journals using Jmol in articles ==		== Elsevier journals using Jmol in articles ==
		+	[[File:Elsevier_Protein_Viewer.png\|border\|right]]Articles in Elsevier journals (ScienceDirect website) which contain protein identifiers display their structure using a Jmol applet.
		+	The applet and its controls, named '''Protein Viewer''', are displayed alongside the article, in the right hand side panel (see image).

−	(soon to be ~~filled~~ in)	+	Using the thumbnail menu on top of the viewer, the user can browse through all protein models tagged in the article and interactively explore each of them: scale the model, change background color, experiment with different display and color schemes, apply surface rendering, switch between ''biological assembly'' and ''asymmetric unit'' and even view structures in a 3D stereo mode. It is also possible to open a larger Protein Viewer in a new window.
		+
		+	Protein structure files used for the interactive visualization in Jmol are obtained from the RCSB Protein Data Bank (PDB).
		+
		+	An example article: [http://dx.doi.org/10.1016/j.jmb.2012.04.031 doi:10.1016/j.jmb.2012.04.031]. Right now, only users with a subscription to the journal are able to view the structures; soon, public view will be available for open-access articles.
		+
		+	===List of journals===
		+	{\|
		+	\|-
		+	\| Appetite \|\| Marine Chemistry
		+	\|-
		+	\| Archives in Biochemistry and Biophysics \|\| Marine Genomics
		+	\|-
		+	\| BBA Bioenergetics \|\| Mechanisms of Ageing and Development
		+	\|-
		+	\| BBA Biomembranes \|\| Microvascular Research
		+	\|-
		+	\| BBA General Subjects \|\| Molecular and Cellular Endocrinology
		+	\|-
		+	\| BBA Proteins and Proteomics \|\| Molecular and Cellular Neuroscience
		+	\|-
		+	\| Behavioural Brain Research \|\| Molecular Cell
		+	\|-
		+	\| Biophysical Journal \|\| Neurobiology of Disease
		+	\|-
		+	\| Bone \|\| Neurobiology of Learning and Memory
		+	\|-
		+	\| Brain Behavior and Immunity \|\| Neurochemistry International
		+	\|-
		+	\| Brain Research \|\| Neuroimage
		+	\|-
		+	\| Brain Research Bulletin \|\| Neuropharmacology
		+	\|-
		+	\| Cell \|\| Neuropsychologia
		+	\|-
		+	\| Chemistry and Biology \|\| Neuroscience
		+	\|-
		+	\| Current Opinion in Neurobiology \|\| Neuroscience Letters
		+	\|-
		+	\| Current Opinion in Structural Biology \|\| Neuroscience Research
		+	\|-
		+	\| Developmental Cognitive Neuroscience \|\| Peptides
		+	\|-
		+	\| Epilepsy and Behavior \|\| Pharmacology
		+	\|-
		+	\| Experimental Eye Research \|\| Physiology & Behavior
		+	\|-
		+	\| Experimental Gerontology \|\| Progress in Neurobiology
		+	\|-
		+	\| Experimental Neurology \|\| Progress in Neuropsychopharmacology & Biological Psychiatry
		+	\|-
		+	\| FEBS Letters \|\| Progress in Retinal and Eye Research
		+	\|-
		+	\| General and Comparative Endocrinology \|\| Prostaglandins and Other Lipid Mediators
		+	\|-
		+	\| Hearing Research \|\| Protein Expression and Purification
		+	\|-
		+	\| International Journal of Developmental Neuroscience \|\| Regulatory Peptides
		+	\|-
		+	\| Journal of Chemical Neuroanatomy \|\| Steroids
		+	\|-
		+	\| Journal of Molecular and Cellular Cardiology \|\| Structure
		+	\|-
		+	\| Journal of Molecular Biology \|\| Trends in Biochemical Sciences
		+	\|-
		+	\| Journal of Molecular Graphics and Modelling \|\| Vision Research
		+	\|-
		+	\| Journal of Proteomics \|\|
		+	\|-
		+	\| Journal of Steroid Biochemistry and Molecular Biology \|\|
		+	\|-
		+	\| Journal of Structural Biology \|\|
		+	\|}

Journals Using Jmol/Elsevier - Revision history

AngelHerraez: Elsevier journals using Jmol applet

AngelHerraez: adding Elsevier