https://wiki.jmol.org/index.php?action=history&feed=atom&title=SimpleBio.mnu 2026-04-11T15:41:31Z Revision history for this page on the wiki MediaWiki 1.32.0 https://wiki.jmol.org/index.php?title=SimpleBio.mnu&diff=8786&oldid=prev 2014-11-12T20:05:04Z

<p>updating popup menu features to 14.3</p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 20:05, 12 November 2014</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l3" >Line 3:</td> <td colspan="2" class="diff-lineno">Line 3:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div># e.g. Secondary School students of biomolecules --Biomodel-3--</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div># e.g. Secondary School students of biomolecules --Biomodel-3--</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div># based on  Jmol.mnu Jmol version 11.6.13  2008-11-24 13:39  en_US</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div># based on  Jmol.mnu Jmol version 11.6.13  2008-11-24 13:39  en_US</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">#  updated for 14.3.3_2014.08.01  2014-08-01 07:38</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div># Only changed entries are set here.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div># Only changed entries are set here.</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div># Made by Angel Herráez, 2009-01-11</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div># Made by Angel Herráez, 2009-01-11<ins class="diffchange diffchange-inline">;  update 2014-11-12</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div># You are welcome to use this menu or any modification of it as you please.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div># You are welcome to use this menu or any modification of it as you please.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l11" >Line 11:</td> <td colspan="2" class="diff-lineno">Line 12:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>@COLORSCHEME = cpk amino#PDB chain#PDB group#PDB shapely#PDB structure#PDB</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>@COLORSCHEME = cpk amino#PDB chain#PDB group#PDB shapely#PDB structure#PDB</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>popupMenu = renderMenu colorMenu spinMenu selectMenuText - advancedMenu <del class="diffchange diffchange-inline">aboutComputedMenu</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>popupMenu = renderMenu colorMenu spinMenu selectMenuText - advancedMenu <ins class="diffchange diffchange-inline">aboutMenu</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>selectMenuText | Select ({0}) = hideNotSelectedCheckbox showSelectionsCheckbox - selectAll selectNone invertSelection - elementsComputedMenu - PDBproteinMenu PDBnucleicMenu PDBheteroMenu PDBcarboMenu PDBnoneOfTheAbove</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>selectMenuText | Select ({0}) = hideNotSelectedCheckbox showSelectionsCheckbox - selectAll selectNone invertSelection - elementsComputedMenu - PDBproteinMenu PDBnucleicMenu PDBheteroMenu PDBcarboMenu PDBnoneOfTheAbove</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>PDBheteroMenu | Hetero = allHetero Water Ligand - PDBheteroComputedMenu</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>PDBheteroMenu | Hetero = allHetero Water Ligand - PDBheteroComputedMenu</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l25" >Line 25:</td> <td colspan="2" class="diff-lineno">Line 26:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>schemeMenu | By Scheme = cpk - amino#PDB chain#PDB group#PDB shapely#PDB structure#PDB  </div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>schemeMenu | By Scheme = cpk - amino#PDB chain#PDB group#PDB shapely#PDB structure#PDB  </div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>spinMenu | Spin = spinOn spinOff  </div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>spinMenu | Spin = spinOn spinOff  </div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>advancedMenu | Advanced = choosePopupMenu languageComputedMenu <del class="diffchange diffchange-inline">JVM12showConsole</del></div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>advancedMenu | Advanced = choosePopupMenu languageComputedMenu <ins class="diffchange diffchange-inline">showConsole</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>choosePopupMenu | Choose menu = defaultMnu</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>choosePopupMenu | Choose menu = defaultMnu</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> </table>

AngelHerraez https://wiki.jmol.org/index.php?title=SimpleBio.mnu&diff=5571&oldid=prev 2009-01-11T16:59:47Z

<p>contribution of a custom menu</p> <p><b>New page</b></p><div>&lt;pre&gt;<br /> # &quot;simpleBio&quot; popup menu for Jmol, devised for first-time users and simple models<br /> # e.g. Secondary School students of biomolecules --Biomodel-3--<br /> # based on Jmol.mnu Jmol version 11.6.13 2008-11-24 13:39 en_US<br /> # Only changed entries are set here.<br /> # Made by Angel Herráez, 2009-01-11<br /> # You are welcome to use this menu or any modification of it as you please.<br /> <br /> # Part I -- Menu Structure<br /> # ------------------------<br /> <br /> @COLORSCHEME = cpk amino#PDB chain#PDB group#PDB shapely#PDB structure#PDB<br /> popupMenu = renderMenu colorMenu spinMenu selectMenuText - advancedMenu aboutComputedMenu<br /> selectMenuText | Select ({0}) = hideNotSelectedCheckbox showSelectionsCheckbox - selectAll selectNone invertSelection - elementsComputedMenu - PDBproteinMenu PDBnucleicMenu PDBheteroMenu PDBcarboMenu PDBnoneOfTheAbove<br /> PDBheteroMenu | Hetero = allHetero Water Ligand - PDBheteroComputedMenu<br /> renderMenu | Style = renderCpkSpacefill renderBallAndStick renderSticks renderWireframe PDBrenderCartoonsOnly PDBrenderTraceOnly PDBstructureMenu - hbondMenu ssbondMenu - stereoMenu<br /> colorMenu | Color = [color_atoms]Menu [color_bonds]Menu [color_hbonds]Menu [color_ssbonds]Menu - [color_backbone]PDBMenu [color_cartoon]PDBsMenu [color_ribbon]PDBsMenu [color_rockets]PDBMenu [color_strands]PDBMenu [color_trace]PDBMenu - [color_background]Menu<br /> [color_atoms]Menu | Atoms = @COLORSCHEME - @COLOR - opaque translucent<br /> [color_backbone]PDBMenu | Backbone = none - @COLORSCHEME - @COLOR - opaque translucent<br /> [color_cartoon]PDBsMenu | Cartoon = none - @COLORSCHEME - @COLOR - opaque translucent<br /> [color_ribbon]PDBsMenu | Ribbons = none - @COLORSCHEME - @COLOR - opaque translucent<br /> [color_rockets]PDBMenu | Rockets = none - @COLORSCHEME - @COLOR - opaque translucent<br /> [color_strands]PDBMenu | Strands = none - @COLORSCHEME - @COLOR - opaque translucent<br /> [color_trace]PDBMenu | Trace = none - @COLORSCHEME - @COLOR - opaque translucent<br /> schemeMenu | By Scheme = cpk - amino#PDB chain#PDB group#PDB shapely#PDB structure#PDB <br /> spinMenu | Spin = spinOn spinOff <br /> advancedMenu | Advanced = choosePopupMenu languageComputedMenu JVM12showConsole<br /> choosePopupMenu | Choose menu = defaultMnu<br /> <br /> # Part II -- Key Definitions<br /> # --------------------------<br /> <br /> defaultMnu | Use full Jmol menu = load menu &quot;&quot;<br /> <br /> # Part III -- Word Translations<br /> # -----------------------------<br /> <br /> &lt;/pre&gt;</div>

AngelHerraez