Colors

From Jmol
Revision as of 18:30, 18 April 2009 by AngelHerraez (talk | contribs) (demo isotopes color: add natural isotopes)
Jump to navigation Jump to search
Jmol + JSmol Documentation

Default colors used by Jmol

Several users have asked about a guide to colors used by Jmol by default.

This documentation is now available on Jmol website here. Suggestions are welcome for future improvements, via jmol-users mailing list.

The plan is:

  • colors for atoms (by element) --done
  • colors for chains --done
  • colors for groups / residues --done
  • alternative color patterns: Jmol, Rasmol, DRuMS --partly done
  • anything else?

Support for isotopes

Common isotopes are recognized by Jmol and colored slightly lighter or darker than the element color:

isotope color color code script syntax
1H
 
[xFFFFFF] _1H
2H
 
[xFFFFC0] _2H, _D, deuterium
3H
 
[xFFFFA0] _3H, _T, tritium
11C
 
[xD8D8D8] _11C
12C
 
[x909090] _12C
13C
 
[x505050] _13C
14C
 
[x404040] _14C
14N
 
[x3050F8] _14N
15N
 
[x105050] _15N