Difference between revisions of "User:Bduke"

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(Test of PopUp window)
(reorgansie and rm unneeded stuff)
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=Tests of Jmol incorporated into a MediaWiki wiki=  
 
=Tests of Jmol incorporated into a MediaWiki wiki=  
  
==Test of PopUp window==
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==How should molecules be shown on Wikipedia==
 
 
<center><jmol><jmolAppletButton><title>Show staggered ethane in popup window using Jmol</title><color>gray</color>
 
<uploadedFileContents>ethane_s.pdb</uploadedFileContents></jmolAppletButton>
 
</jmol></center>
 
 
 
I would suggest that something like this is used on wikipedia or other Wikimedia Foundation projects such as wikiversity or wikibooks, so that the jmol image is only loaded if the reader wants to load it.
 
  
 
{|name="userboxes" id="userboxes" style="margin-left: 1em; margin-bottom: 0.5em; width: 170px; border: {{{bordercolor|#99B3FF}}} solid 1px; background-color: {{{backgroundcolor|#FFFFFF}}}; {{{extra-css|}}}" align="right"
 
{|name="userboxes" id="userboxes" style="margin-left: 1em; margin-bottom: 0.5em; width: 170px; border: {{{bordercolor|#99B3FF}}} solid 1px; background-color: {{{backgroundcolor|#FFFFFF}}}; {{{extra-css|}}}" align="right"
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</center>
 
</center>
 
|-
 
|-
|}
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|} This is an example of how a molecule might be displayed on Wikipedia, or other Wikimedia Foundation projects such as wikiversity or wikibooks, with the text raping to the left of a box with a Jmol image in it. The Jmol image is only loaded if the reader wants to load it by clicking on the text below the straight image.
Another possibility: an image is displayed and the user may request the Jmol model:
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 +
While there are several ways of having the data file, it seems to me that on Wikipedia the easiest and most suitable would be to have them uploaded like images. Preferable they could be uploaded to Commons but the current extension would not, I believe, accept that.
 +
 
 +
On Wikipedia the paragraph could be lengthened to fit the image by using the template <nowiki>{{clear}}</nowiki>, as here.
 
{{clear}}
 
{{clear}}
  
==An example of how a molecule might be shown on Wikipedia==
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==Test of PopUp window==
  
{|name="userboxes" id="userboxes" style="margin-left: 1em; margin-bottom: 0.5em; width: 170px; border: {{{bordercolor|#99B3FF}}} solid 1px; background-color: {{{backgroundcolor|#FFFFFF}}}; {{{extra-css|}}}" align="right"
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This is a simple test of the popup used above:-
|-
 
|<center>
 
<jmol><jmolApplet>
 
<name>ethane_s0</name><color>red</color><size>150</size>
 
<uploadedFileContents>ethane_s.pdb</uploadedFileContents>
 
</jmolApplet>
 
</jmol></center>
 
|-
 
| <center>'''Staggered ethane'''</center>
 
|-
 
|}
 
This is an example of how a molecule might be displayed on Wikipedia, with the text raping to the left of a box with a Jmol image in it.
 
  
The PopUp formula would also be a good way with the pop up box in the chemical infobox. This would leave viewing the molecule to the reader. It woud not appear when opening the page.
+
<center><jmol><jmolAppletButton><title>Show staggered ethane in popup window using Jmol</title><color>gray</color>
 +
<uploadedFileContents>ethane_s.pdb</uploadedFileContents></jmolAppletButton>
 +
</jmol></center>
  
While there are several ways of having the data file, it seems to me that on Wikipedia the easiest and most suitable would be to have them uploaded like images. Preferable they could be uploaded to Commons but the current extension would not, I believe, accept that.
 
 
On Wikipedia the paragraph could be lengthened to fit the image by using the template <nowiki>{{clear}}</nowiki>, now installed here.
 
{{clear}}
 
 
==Staggered and eclipsed ethane==
 
==Staggered and eclipsed ethane==
  

Revision as of 01:27, 1 December 2008

Interested in Jmol in general and in particular right now about adding Jmol images to Wikis, particularly Wikipedia.

Tests of Jmol incorporated into a MediaWiki wiki

How should molecules be shown on Wikipedia

Ethane s.gif
Staggered ethane

This is an example of how a molecule might be displayed on Wikipedia, or other Wikimedia Foundation projects such as wikiversity or wikibooks, with the text raping to the left of a box with a Jmol image in it. The Jmol image is only loaded if the reader wants to load it by clicking on the text below the straight image.

While there are several ways of having the data file, it seems to me that on Wikipedia the easiest and most suitable would be to have them uploaded like images. Preferable they could be uploaded to Commons but the current extension would not, I believe, accept that.

On Wikipedia the paragraph could be lengthened to fit the image by using the template {{clear}}, as here.


Test of PopUp window

This is a simple test of the popup used above:-

Staggered and eclipsed ethane

These are pdb files generated by Sybyl for staggered and eclipsed ethane. They use uploadedFileContents type for the data. Use the buttons and the menu that comes up by right mouse clicking on the image to manipulate the images. The left mouse can be used to move the image.

        

These are examples using inlineContents:

        

Artemisinin.pdb uploaded

Some examples that do not work are commented out below. Feel free to edit this page to look at them.


wikiPageContent Test from this server

This pdb file was uploaded to the wiki as a file and is being read from its page: User:Bduke/ethane-s.pdb