https://wiki.jmol.org/index.php?title=Websites_Using_Jmol&feed=atom&action=history Websites Using Jmol - Revision history 2024-03-29T12:32:33Z Revision history for this page on the wiki MediaWiki 1.32.0 https://wiki.jmol.org/index.php?title=Websites_Using_Jmol&diff=9584&oldid=prev EricMartz at 23:26, 28 January 2016 2016-01-28T23:26:50Z <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 23:26, 28 January 2016</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l3" >Line 3:</td> <td colspan="2" class="diff-lineno">Line 3:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>This page has been split in two because it got very large and cumbersome to edit.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>This page has been split in two because it got very large and cumbersome to edit.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">&lt;big&gt;&lt;big&gt;'''</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[Websites Using Jmol: A-L]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[Websites Using Jmol: A-L]]</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[Websites Using Jmol: M-Z]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[Websites Using Jmol: M-Z]]</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">'''&lt;/big&gt;&lt;/big&gt;</ins></div></td></tr> </table> EricMartz https://wiki.jmol.org/index.php?title=Websites_Using_Jmol&diff=9582&oldid=prev EricMartz at 23:25, 28 January 2016 2016-01-28T23:25:24Z <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 23:25, 28 January 2016</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l4" >Line 4:</td> <td colspan="2" class="diff-lineno">Line 4:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[Websites Using Jmol: A-L]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[[Websites Using Jmol: A-L]]</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">*[[Websites Using Jmol: M-Z]]</ins></div></td></tr> </table> EricMartz https://wiki.jmol.org/index.php?title=Websites_Using_Jmol&diff=9580&oldid=prev EricMartz: Replaced content with "{{Jmol_Applications_Sections}} This page has been split in two because it got very large and cumbersome to edit. *Websites Using Jmol: A-L" 2016-01-28T23:24:40Z <p>Replaced content with &quot;{{Jmol_Applications_Sections}} This page has been split in two because it got very large and cumbersome to edit. *<a href="/index.php/Websites_Using_Jmol:_A-L" title="Websites Using Jmol: A-L">Websites Using Jmol: A-L</a>&quot;</p> <a href="https://wiki.jmol.org/index.php?title=Websites_Using_Jmol&amp;diff=9580&amp;oldid=9546">Show changes</a> EricMartz https://wiki.jmol.org/index.php?title=Websites_Using_Jmol&diff=9546&oldid=prev EricMartz at 22:45, 28 January 2016 2016-01-28T22:45:13Z <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 22:45, 28 January 2016</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l58" >Line 58:</td> <td colspan="2" class="diff-lineno">Line 58:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://theory-of-evolution.net/evolution-of-knowledge.html Evolution of Knowledge] ''Uses scripts to color conserved amino acids in proteins like insulin and G3PD. Attention: this is an &quot;intelligent design&quot; website that links to non-peer reviewed material. The arguments for intelligent design of macromolecules and of life in general are very weak and have been refuted in many venues. Note that the chapters of the book that this site links to have not been subject to legitimate peer review.''</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://theory-of-evolution.net/evolution-of-knowledge.html Evolution of Knowledge] ''Uses scripts to color conserved amino acids in proteins like insulin and G3PD. Attention: this is an &quot;intelligent design&quot; website that links to non-peer reviewed material. The arguments for intelligent design of macromolecules and of life in general are very weak and have been refuted in many venues. Note that the chapters of the book that this site links to have not been subject to legitimate peer review.''</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{Anchor|F}}</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{Anchor|F}}</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* [http://firstglance.jmol.org/ FirstGlance in <del class="diffchange diffchange-inline">Jmol</del>] is a simple, browser-based tool for molecular visualization. Buttons show informative views of any macromolecule available on-line. Help, including color keys, appears automatically and is always in view. Hyperlinks show a molecule in one click. It is designed to be useful both to novices and to specialists.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* [http://firstglance.jmol.org/ FirstGlance in <ins class="diffchange diffchange-inline">JSmol</ins>] is a simple, browser-based tool for molecular visualization. Buttons show informative views of any macromolecule available on-line. Help, including color keys, appears automatically and is always in view. Hyperlinks show a molecule in one click. It is designed to be useful both to novices and to specialists<ins class="diffchange diffchange-inline">. Used over 500,000 times. 3D buttons in ''Nature'' show newly published structures in ''FirstGlance''</ins>.  </div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://flexweb.asu.edu/software/first FlexWeb - FIRST Online] - Arizona State University, Tempe, Arizona, USA; ''FIRST / FRODA Software for rigidity analysis and geometric rigidity simulation. Registration Required but free for non-commercial users''</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://flexweb.asu.edu/software/first FlexWeb - FIRST Online] - Arizona State University, Tempe, Arizona, USA; ''FIRST / FRODA Software for rigidity analysis and geometric rigidity simulation. Registration Required but free for non-commercial users''</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.factorxi.com/ FXI Deficiency Mutation Database] - UCL, UK</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.factorxi.com/ FXI Deficiency Mutation Database] - UCL, UK</div></td></tr> </table> EricMartz https://wiki.jmol.org/index.php?title=Websites_Using_Jmol&diff=9517&oldid=prev EricMartz at 22:29, 28 January 2016 2016-01-28T22:29:09Z <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 22:29, 28 January 2016</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l14" >Line 14:</td> <td colspan="2" class="diff-lineno">Line 14:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://av.bmbq.uma.es/bma/apuntes/index.htm Apuntes de Biología Molecular] ''by M. Gonzalo Claros'' - Universidad de Málaga, Málaga (Spain).</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://av.bmbq.uma.es/bma/apuntes/index.htm Apuntes de Biología Molecular] ''by M. Gonzalo Claros'' - Universidad de Málaga, Málaga (Spain).</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://ajarduengo.net/ Arduengo Research Group X-ray Structures] ''The Jmol applet is used to depict X-ray structures obtained by the research group of Prof. A.J. Arduengo (Structures entry under '''''Structures''''' Link.'' - University of Alabama - Tuscaloosa, U.S.A.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://ajarduengo.net/ Arduengo Research Group X-ray Structures] ''The Jmol applet is used to depict X-ray structures obtained by the research group of Prof. A.J. Arduengo (Structures entry under '''''Structures''''' Link.'' - University of Alabama - Tuscaloosa, U.S.A.</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* [http://atlas.proteinexplorer.org Atlas of Macromolecules] is a browsable list of over 150 3D protein or nucleic acid structures, many with snapshots, and each with links for viewing in [http://firstglance.jmol.org FirstGlance in <del class="diffchange diffchange-inline">Jmol</del>].</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* [http://atlas.proteinexplorer.org Atlas of Macromolecules] is a browsable list of over 150 3D protein or nucleic acid structures, many with snapshots, and each with links for viewing in [http://firstglance.jmol.org FirstGlance in <ins class="diffchange diffchange-inline">JSmol</ins>].</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{Anchor|B}}</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{Anchor|B}}</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[http://fenix.cecalc.ula.ve/moleculas/ Banco de Datos de Moleculas Interactivas] is an undergoing project to provide High School and Higher Education Students and Teachers with tools to develop a throughly chemistry teaching experience.-in Spanish, by [[User:einarabelc5| Einar Coutin]], Universidad de Los Andes (Venezuela).</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[http://fenix.cecalc.ula.ve/moleculas/ Banco de Datos de Moleculas Interactivas] is an undergoing project to provide High School and Higher Education Students and Teachers with tools to develop a throughly chemistry teaching experience.-in Spanish, by [[User:einarabelc5| Einar Coutin]], Universidad de Los Andes (Venezuela).</div></td></tr> </table> EricMartz https://wiki.jmol.org/index.php?title=Websites_Using_Jmol&diff=9507&oldid=prev EricMartz at 22:24, 28 January 2016 2016-01-28T22:24:35Z <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 22:24, 28 January 2016</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l53" >Line 53:</td> <td colspan="2" class="diff-lineno">Line 53:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.edinformatics.com/interactive_molecules/ EDinformatics -- Explain it With Molecules] This is an interactive site designed for K-12 students.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.edinformatics.com/interactive_molecules/ EDinformatics -- Explain it With Molecules] This is an interactive site designed for K-12 students.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.edumol.fi Edumol] is a JSmol-JSme-based molecular modelling site. It's chemistry and educational functions are optimized for basic and secondary level chemistry education.  </div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.edumol.fi Edumol] is a JSmol-JSme-based molecular modelling site. It's chemistry and educational functions are optimized for basic and secondary level chemistry education.  </div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* [http://bioinformatics.org/molvis/edm Electron Density Maps] shows in JSmol how isomeshes are derived from the one-sigma electron density data, and how temperature (B value) is related to electron density.</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://bar.utoronto.ca/eplant/ ePlant] is a suite of 3D data display modules for integrative systems biology of the model plant &lt;i&gt;Arabidopsis thaliana&lt;/i&gt;. Jmol is used to render annotated protein structures and protein-protein interaction networks.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://bar.utoronto.ca/eplant/ ePlant] is a suite of 3D data display modules for integrative systems biology of the model plant &lt;i&gt;Arabidopsis thaliana&lt;/i&gt;. Jmol is used to render annotated protein structures and protein-protein interaction networks.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.erowid.org/psychoactives/chemistry/chemistry_compare_3d.php Erowid chem compare 3d] side-by-side comparison of two molecules for many, many psychoactive compounds. Features: dynamic loading of applet without page reload based on user preferences; synchronization of mouse control for both molecules; Highlighting of elements with drop-down menu.  </div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.erowid.org/psychoactives/chemistry/chemistry_compare_3d.php Erowid chem compare 3d] side-by-side comparison of two molecules for many, many psychoactive compounds. Features: dynamic loading of applet without page reload based on user preferences; synchronization of mouse control for both molecules; Highlighting of elements with drop-down menu.  </div></td></tr> </table> EricMartz https://wiki.jmol.org/index.php?title=Websites_Using_Jmol&diff=9093&oldid=prev Johannespernaa at 05:50, 27 December 2015 2015-12-27T05:50:06Z <p></p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 05:50, 27 December 2015</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l52" >Line 52:</td> <td colspan="2" class="diff-lineno">Line 52:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://ecoliwiki.net/EcoliWIki EcoliWiki] Wiki-based community annotation of ''E. coli'', its bacteriophages, plasmids, and mobile genetic elements.  Jmol used for visualizing proteins with available structures.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://ecoliwiki.net/EcoliWIki EcoliWiki] Wiki-based community annotation of ''E. coli'', its bacteriophages, plasmids, and mobile genetic elements.  Jmol used for visualizing proteins with available structures.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.edinformatics.com/interactive_molecules/ EDinformatics -- Explain it With Molecules] This is an interactive site designed for K-12 students.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.edinformatics.com/interactive_molecules/ EDinformatics -- Explain it With Molecules] This is an interactive site designed for K-12 students.</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* [http://www.edumol.fi Edumol] is a JSmol-JSme-based molecular modelling site. It's chemistry and educational functions are optimized for basic and secondary level chemistry education. </ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://bar.utoronto.ca/eplant/ ePlant] is a suite of 3D data display modules for integrative systems biology of the model plant &lt;i&gt;Arabidopsis thaliana&lt;/i&gt;. Jmol is used to render annotated protein structures and protein-protein interaction networks.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://bar.utoronto.ca/eplant/ ePlant] is a suite of 3D data display modules for integrative systems biology of the model plant &lt;i&gt;Arabidopsis thaliana&lt;/i&gt;. Jmol is used to render annotated protein structures and protein-protein interaction networks.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.erowid.org/psychoactives/chemistry/chemistry_compare_3d.php Erowid chem compare 3d] side-by-side comparison of two molecules for many, many psychoactive compounds. Features: dynamic loading of applet without page reload based on user preferences; synchronization of mouse control for both molecules; Highlighting of elements with drop-down menu.  </div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.erowid.org/psychoactives/chemistry/chemistry_compare_3d.php Erowid chem compare 3d] side-by-side comparison of two molecules for many, many psychoactive compounds. Features: dynamic loading of applet without page reload based on user preferences; synchronization of mouse control for both molecules; Highlighting of elements with drop-down menu.  </div></td></tr> </table> Johannespernaa https://wiki.jmol.org/index.php?title=Websites_Using_Jmol&diff=9081&oldid=prev AngelHerraez: removing obsolete link 2015-12-19T12:32:10Z <p>removing obsolete link</p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 12:32, 19 December 2015</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l63" >Line 63:</td> <td colspan="2" class="diff-lineno">Line 63:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://agknapp.chemie.fu-berlin.de/gplus GANGSTA+] - GANGSTA+ non-sequential 3D-structure alignment tool</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://agknapp.chemie.fu-berlin.de/gplus GANGSTA+] - GANGSTA+ non-sequential 3D-structure alignment tool</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://gris.ulb.ac.be GRIS: Glycoprotein-hormone Receptors Information System] - GRIS gathers and presents heterogenous data on glycoprotein-hormone receptors (GpHRs) such as mutational data, homology models and allows the users to employ several structural analysis tools. Jmol is used to visualize the models.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://gris.ulb.ac.be GRIS: Glycoprotein-hormone Receptors Information System] - GRIS gathers and presents heterogenous data on glycoprotein-hormone receptors (GpHRs) such as mutational data, homology models and allows the users to employ several structural analysis tools. Jmol is used to visualize the models.</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* [https://dl.dropboxusercontent.com/u/109697111/BQ/guiones.html Guiones Estructurales] (Structural scripts) - a collection of tutorials on several proteins (in Spanish) by Prof. Iñigo Fernández de Larrinoa (University of the Basque Country, Spain) - User may choose Jmol or JSmol.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins class="diffchange diffchange-inline">&lt;!--</ins>* [https://dl.dropboxusercontent.com/u/109697111/BQ/guiones.html Guiones Estructurales] (Structural scripts) - a collection of tutorials on several proteins (in Spanish) by Prof. Iñigo Fernández de Larrinoa (University of the Basque Country, Spain) - User may choose Jmol or JSmol.<ins class="diffchange diffchange-inline">--&gt;</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{Anchor|H}}</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{Anchor|H}}</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.hbar-lab.com hBar Lab: Computer-aided Chemistry On Demand] - First web application for performing molecular modeling calculations including quantum chemistry calculations online. registration required.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.hbar-lab.com hBar Lab: Computer-aided Chemistry On Demand] - First web application for performing molecular modeling calculations including quantum chemistry calculations online. registration required.</div></td></tr> </table> AngelHerraez https://wiki.jmol.org/index.php?title=Websites_Using_Jmol&diff=8829&oldid=prev AngelHerraez: DNA tutorial 2015-02-27T14:51:38Z <p>DNA tutorial</p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 14:51, 27 February 2015</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l43" >Line 43:</td> <td colspan="2" class="diff-lineno">Line 43:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://ekhidna.biocenter.helsinki.fi/dali/ Dali] - Protein structure comparison and database searching. Resulting structural superimpositions viewed using Jmol.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://ekhidna.biocenter.helsinki.fi/dali/ Dali] - Protein structure comparison and database searching. Resulting structural superimpositions viewed using Jmol.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.ecosci.jp/ec.html Data Book of Molecules] - Home Page for Learning Environmental Chemistry, Japan</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.ecosci.jp/ec.html Data Book of Molecules] - Home Page for Learning Environmental Chemistry, Japan</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* [http://biomodel.uah.es/en/model4/dna/ DNA Structure Tutorial] - a classic by [[User:EricMartz|Eric Martz]], converted to Jmol/JSmol by [[User:AngelHerraez|Angel Herráez]]. Available in 10 languages! Disponible también en español. Também disponível em português. Disponible aussi en français. Auch verfügbar auf Deutsch. Disponibil i în limba română. Anche disponibile in italiano. Również dostępne w języku polskim. Türkçe çevirisi mevcuttur. 进入 中文版. ยังมีอยู่ในไทย. Επίσης διαθέσιμο στα Ελληνικά. </ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.uwosh.edu/faculty_staff/gutow/VSEPR_TUTORIAL/VSEPR.html Dr. Gutow's VSEPR Tutorial] - Hosted by the University of Wisconsin Oshkosh this is a tutorial on the VSEPR (Valence Shell Electron Pair Repulsion) model for determining molecular shapes. Example molecules viewed using Jmol.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.uwosh.edu/faculty_staff/gutow/VSEPR_TUTORIAL/VSEPR.html Dr. Gutow's VSEPR Tutorial] - Hosted by the University of Wisconsin Oshkosh this is a tutorial on the VSEPR (Valence Shell Electron Pair Repulsion) model for determining molecular shapes. Example molecules viewed using Jmol.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.uwosh.edu/faculty_staff/gutow/Orbitals/Cl/Cl_AOs.shtml Dr. Gutow's Atomic Orbital Page] - Hosted by the University of Wisconsin Oshkosh this site uses Jmol to allow the user to choose and compare atomic orbitals (1s, 2s, 2p, 3s, 3p, 4s, 3d and 4p orbitals).</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.uwosh.edu/faculty_staff/gutow/Orbitals/Cl/Cl_AOs.shtml Dr. Gutow's Atomic Orbital Page] - Hosted by the University of Wisconsin Oshkosh this site uses Jmol to allow the user to choose and compare atomic orbitals (1s, 2s, 2p, 3s, 3p, 4s, 3d and 4p orbitals).</div></td></tr> </table> AngelHerraez https://wiki.jmol.org/index.php?title=Websites_Using_Jmol&diff=8828&oldid=prev AngelHerraez: a new site + two capitalization fixes 2015-02-27T14:45:08Z <p>a new site + two capitalization fixes</p> <table class="diff diff-contentalign-left" data-mw="interface"> <col class="diff-marker" /> <col class="diff-content" /> <col class="diff-marker" /> <col class="diff-content" /> <tr class="diff-title" lang="en"> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">← Older revision</td> <td colspan="2" style="background-color: #fff; color: #222; text-align: center;">Revision as of 14:45, 27 February 2015</td> </tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l18" >Line 18:</td> <td colspan="2" class="diff-lineno">Line 18:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[http://fenix.cecalc.ula.ve/moleculas/ Banco de Datos de Moleculas Interactivas] is an undergoing project to provide High School and Higher Education Students and Teachers with tools to develop a throughly chemistry teaching experience.-in Spanish, by [[User:einarabelc5| Einar Coutin]], Universidad de Los Andes (Venezuela).</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>*[http://fenix.cecalc.ula.ve/moleculas/ Banco de Datos de Moleculas Interactivas] is an undergoing project to provide High School and Higher Education Students and Teachers with tools to develop a throughly chemistry teaching experience.-in Spanish, by [[User:einarabelc5| Einar Coutin]], Universidad de Los Andes (Venezuela).</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.rosalindfranklin.edu/cms/biochem/Walters/psf.html Biochemistry for Medical Students--Protein Structure and Function] Examples of protein structures relevant to medicine.  --Eric Walters, Rosalind Franklin University of Medicine and Science (USA).</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.rosalindfranklin.edu/cms/biochem/Walters/psf.html Biochemistry for Medical Students--Protein Structure and Function] Examples of protein structures relevant to medicine.  --Eric Walters, Rosalind Franklin University of Medicine and Science (USA).</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* [http://biomodel.uah.es/ Biomodel] ''Teaching resources and self-guided learning for structure and interaction of biomolecules: amino acids, carbohydrates, stereoisomerism, lipids, lipid bilayer, proteins, nucleic acids, nucleic acid-protein complexes, biopolymers'' - in Spanish, by [[User:AngelHerraez|Angel <del class="diffchange diffchange-inline">Herraez</del>]], Universidad de Alcalá (Spain).</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* [http://biomodel.uah.es/ Biomodel] ''Teaching resources and self-guided learning for structure and interaction of biomolecules: amino acids, carbohydrates, stereoisomerism, lipids, lipid bilayer, proteins, nucleic acids, nucleic acid-protein complexes, biopolymers'' - in Spanish, by [[User:AngelHerraez|Angel <ins class="diffchange diffchange-inline">Herráez</ins>]], Universidad de Alcalá (Spain)<ins class="diffchange diffchange-inline">. Also some sections duplicated in English. -- User may choose Jmol or JSmol</ins>.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.umass.edu/molvis/bme3d/ Biomolecular Explorer 3D] ''designed to give high school biology teachers easy access to interactive 3D structures of biologically significant molecules. Website and CD-ROM.''</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.umass.edu/molvis/bme3d/ Biomolecular Explorer 3D] ''designed to give high school biology teachers easy access to interactive 3D structures of biologically significant molecules. Website and CD-ROM.''</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://biology.kenyon.edu/BMB/chime.htm Biomolecules at Kenyon] Jmol tutorials created by Kenyon College undergraduates.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://biology.kenyon.edu/BMB/chime.htm Biomolecules at Kenyon] Jmol tutorials created by Kenyon College undergraduates.</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l62" >Line 62:</td> <td colspan="2" class="diff-lineno">Line 62:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://agknapp.chemie.fu-berlin.de/gplus GANGSTA+] - GANGSTA+ non-sequential 3D-structure alignment tool</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://agknapp.chemie.fu-berlin.de/gplus GANGSTA+] - GANGSTA+ non-sequential 3D-structure alignment tool</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://gris.ulb.ac.be GRIS: Glycoprotein-hormone Receptors Information System] - GRIS gathers and presents heterogenous data on glycoprotein-hormone receptors (GpHRs) such as mutational data, homology models and allows the users to employ several structural analysis tools. Jmol is used to visualize the models.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://gris.ulb.ac.be GRIS: Glycoprotein-hormone Receptors Information System] - GRIS gathers and presents heterogenous data on glycoprotein-hormone receptors (GpHRs) such as mutational data, homology models and allows the users to employ several structural analysis tools. Jmol is used to visualize the models.</div></td></tr> <tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">* [https://dl.dropboxusercontent.com/u/109697111/BQ/guiones.html Guiones Estructurales] (Structural scripts) - a collection of tutorials on several proteins (in Spanish) by Prof. Iñigo Fernández de Larrinoa (University of the Basque Country, Spain) - User may choose Jmol or JSmol.</ins></div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{Anchor|H}}</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{Anchor|H}}</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.hbar-lab.com hBar Lab: Computer-aided Chemistry On Demand] - First web application for performing molecular modeling calculations including quantum chemistry calculations online. registration required.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.hbar-lab.com hBar Lab: Computer-aided Chemistry On Demand] - First web application for performing molecular modeling calculations including quantum chemistry calculations online. registration required.</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l161" >Line 161:</td> <td colspan="2" class="diff-lineno">Line 162:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://macxray.chem.upenn.edu/ U Penn X-ray Facility] - The X-ray Facility in the Department of Chemistry at the University of Pennsylvania uses Jmol to archive completed structure determinations</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://macxray.chem.upenn.edu/ U Penn X-ray Facility] - The X-ray Facility in the Department of Chemistry at the University of Pennsylvania uses Jmol to archive completed structure determinations</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{Anchor|V}}</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{Anchor|V}}</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* [http://viperdb.scripps.edu/ <del class="diffchange diffchange-inline">Virus </del>Particle ExploreR] - VIPERdb at The Scripps Research Institute. Enter the world of Icosahedral (isometric) Viral Capsids. We are interested in the study of capsid formation through the analysis of protein-protein interactions. Jmol helps visualize the symmetrical arrangements these proteins take when fully assembled into the viral capsid. It also serves as an educational tool to help understand concepts as the triangulation number (T), icosahedral symmetry, etc. To see it in action, access an entry info page for a particular virus (for example PDB-ID 2bbv) and open the IAU (Icosahedral Asymmetric Unit) tab.</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* [http://viperdb.scripps.edu/ <ins class="diffchange diffchange-inline">VIrus </ins>Particle ExploreR] - VIPERdb at The Scripps Research Institute. Enter the world of Icosahedral (isometric) Viral Capsids. We are interested in the study of capsid formation through the analysis of protein-protein interactions. Jmol helps visualize the symmetrical arrangements these proteins take when fully assembled into the viral capsid. It also serves as an educational tool to help understand concepts as the triangulation number (T), icosahedral symmetry, etc. To see it in action, access an entry info page for a particular virus (for example PDB-ID 2bbv) and open the IAU (Icosahedral Asymmetric Unit) tab.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.cem.msu.edu/~reusch/vtxtindex.htm Virtual Textbook of Organic Chemistry] - Michigan State University, USA Because this is a large site the Jmol references may be difficult to find ... but they are in there.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://www.cem.msu.edu/~reusch/vtxtindex.htm Virtual Textbook of Organic Chemistry] - Michigan State University, USA Because this is a large site the Jmol references may be difficult to find ... but they are in there.</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{Anchor|W}}</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{Anchor|W}}</div></td></tr> <tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l173" >Line 173:</td> <td colspan="2" class="diff-lineno">Line 174:</td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{Anchor|Z}}</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>{{Anchor|Z}}</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://helios.princeton.edu/zeomics/ ZEOMICS: Zeolites and Microporous Structures Characterization] - Princeton University, Princeton, NJ, USA</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://helios.princeton.edu/zeomics/ ZEOMICS: Zeolites and Microporous Structures Characterization] - Princeton University, Princeton, NJ, USA</div></td></tr> <tr><td class='diff-marker'>−</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>* [http://zinc.docking.org/ <del class="diffchange diffchange-inline">Zinc </del>is not Commercial] - University of California, San Francisco, USA Database with more than 3.3 million 3D small molecules free for download and online viewable with Jmol</div></td><td class='diff-marker'>+</td><td style="color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>* [http://zinc.docking.org/ <ins class="diffchange diffchange-inline">ZINC </ins>is not Commercial] - University of California, San Francisco, USA Database with more than 3.3 million 3D small molecules free for download and online viewable with Jmol</div></td></tr> <tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://zincpharmer.csb.pitt.edu ZincPharmer] - Online interactive pharmacophore search software for screening the ZINC database. University of Pittsburgh.</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>* [http://zincpharmer.csb.pitt.edu ZincPharmer] - Online interactive pharmacophore search software for screening the ZINC database. University of Pittsburgh.</div></td></tr> </table> AngelHerraez