Difference between revisions of "User:EricMartz"
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− | I am the main author of [http://firstglance.jmol.org FirstGlance in Jmol], a simple, browser-based tool for molecular visualization adopted by ''[http://www.nature.com/nsmb Nature Structural and Molecular Biology]'', among [http://firstglance.jmol.org/adoption.htm others]. FirstGlance is designed to be useful both to novices and to specialists. It works in all popular browsers and platforms, including Internet Explorer or Firefox on Windows, Safari on Mac OSX, and Mozilla Firefox on linux. A hyperlink to FirstGlance can show any PDB file in one click. It is free for all users, and its source code is freely available for others to adapt. | + | [http://joshua-alan.idilis.ro/resources/dragostea-dintai/ dragostea dintai] [http://asusehuk.idilis.ro/articles/b-tyler/ b tyler] [http://asusehuk.idilis.ro/articles/sfilate-alta/ sfilate alta moda parigi] [http://joshua-alan.idilis.ro/resources/monitor-r1/ monitor r300] [http://dark-ginger.idilis.ro/make-money1.htm make money online] [http://stellarsparty.idilis.ro/styles/lancia-lybra25.html lancia lybra intensa] [http://trollgris.idilis.ro/hard-disk541.html hard disk portatile per foto] [http://dark-ginger.idilis.ro/soggiorno-firenze.htm soggiorno firenze] [http://stellarsparty.idilis.ro/styles/imprese-edili11.html imprese edili di pescara] [http://dark-ginger.idilis.ro/feste-nel2.htm feste nel veneto] [http://trollgris.idilis.ro/scott-bakula1.html scott bakula] [http://trollgris.idilis.ro/a-scuola1.html a scuola di enduro] [http://dark-ginger.idilis.ro/keygen-anydvd.htm keygen anydvd] 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cover dvd libro giungla 2] [http://stellarsparty.idilis.ro/styles/volo-san7.html volo san giovanni rotondo] [http://asusehuk.idilis.ro/articles/evanescance/ evanescance] [http://joshua-alan.idilis.ro/resources/miris-zene/ miris zene] [http://stellarsparty.idilis.ro/styles/valentina-pace.html valentina pace] [http://dark-ginger.idilis.ro/basado-en.htm basado en hechos reales] [http://dark-ginger.idilis.ro/il-trapezio.htm il trapezio della vita] [http://dark-ginger.idilis.ro/playstation4.htm playstation] [http://stellarsparty.idilis.ro/styles/nikon61.html nikon 3100] [http://asusehuk.idilis.ro/articles/personal-finance/ personal finance] [http://joshua-alan.idilis.ro/resources/dvd-slim5/ dvd slim esterno] [http://dark-ginger.idilis.ro/ypsilon-km1.htm ypsilon km zero] [http://trollgris.idilis.ro/hp-142.html hp 344 cartucce] [http://trollgris.idilis.ro/samsung-rl1.html samsung rl 39] [http://dark-ginger.idilis.ro/sony-cybershot71.htm sony cybershot s90] [http://stellarsparty.idilis.ro/styles/lg-monitor7.html lg monitor lcd 16 9] [http://joshua-alan.idilis.ro/resources/f-aereo/ f aereo] [http://dark-ginger.idilis.ro/spacer-gif.htm spacer gif] I am the main author of [http://firstglance.jmol.org FirstGlance in Jmol], a simple, browser-based tool for molecular visualization adopted by ''[http://www.nature.com/nsmb Nature Structural and Molecular Biology]'', among [http://firstglance.jmol.org/adoption.htm others]. FirstGlance is designed to be useful both to novices and to specialists. It works in all popular browsers and platforms, including Internet Explorer or Firefox on Windows, Safari on Mac OSX, and Mozilla Firefox on linux. A hyperlink to FirstGlance can show any PDB file in one click. It is free for all users, and its source code is freely available for others to adapt. |
Key views are shown via one-click links from an always-visible control panel: secondary structure, amino and carboxy termini, general composition, hydrophobic vs. polar regions (or cores, using slab mode), charges, and multiple models when present (NMR). Convenience buttons show or hide ligands or water, toggle slab mode, zoom up/down, and change the background color. Help about each view or operation, including color keys, appears automatically, and is always in view. | Key views are shown via one-click links from an always-visible control panel: secondary structure, amino and carboxy termini, general composition, hydrophobic vs. polar regions (or cores, using slab mode), charges, and multiple models when present (NMR). Convenience buttons show or hide ligands or water, toggle slab mode, zoom up/down, and change the background color. Help about each view or operation, including color keys, appears automatically, and is always in view. |
Revision as of 01:04, 24 October 2007
dragostea dintai b tyler sfilate alta moda parigi monitor r300 make money online lancia lybra intensa hard disk portatile per foto soggiorno firenze imprese edili di pescara feste nel veneto scott bakula a scuola di enduro keygen anydvd borsa azione lettore mp3 con porta usb tito tarantula erptic sony mznh600 calcolo nascite rapporto lunare jingle bells traduzione in italiano zigurrat sassello hely club med ferrino transalp 90 hp plotter designjet 30 ignis asc10 incontro treviglio cd r win memorie ram per notebook bloc camera commercio di roma sono cosi rs mmc card 512 dual voltage carnage effetti luce per dj unwanted olympus c 150 m300 batteria traghetti genova istituti non vedenti torino gps nokia 6670 si dieman italia puglia vacanza antiquari catania mp3 10 gb http charmilles com it autoradio pioneer accessori monitor pc yamaha dvd s657 big babes olympus 40150 esecuzione baldoni ostaggio italiano aldo moro batteria per nokia 6230i motorola software scherzo matrimonio boxster usata las canciones de thalia living gold srl vhf nautica olivetti dm 286 trust ups energy protector 400 aquarion cientificos infantiles kiko matamoros anima manga nuova canzone dei ozone foto mare marocco distillerie virusscan 9 0 professional christina ag donnne famose in perizoma morara spa aleksandr nevsky catfighting baci lesbo vip balicki zygmunt filippa filippa lista obbligazione vacanza natale 83 nikon f80 giovanna darco al rogo wawes of luv midi osservazione del cielo film dvd notizia ansa jessore twinks hit mania 80 canzoni dei blue mp www comune modena it scuole fermi knocking on heave s door tengo ganas de ti us robotics router de paoli giovanni spa intel 915p www googleit cromatografia mecotek divx influenza aviaria tesi di elettronica e telecomunicazione grup cali gioco online spara spara comune di fiumicino il tuo dolce corpo da uccidere kazaa download italia rap demos accessori per videoproiettori acer isspro anti virus gratis ww dagbladet no biografia di daniel ducruet prenotazione cinema io sono bugiarda raccontami calabria case vacanza www valtellina splinter cell ds kolovrat calendario elena barolo e giorgia palmas necazuri bonnaroo music festival 2002 te cianno mai mannato tigre max e simo pianino cirie prefazione sul fascismo velvet goldmine elenco personale ata messina prodi berlusconi yellowcard x hotel civitanovamarche head liquid metal bluvacanze vendita case a bologna racconti di cucina inseminator sex me pones mas rolf loveland skay tv valencia inter isola dei famosi ose bradstreet anne unicei it sceen saver acquario 3d los telez gritaria intrage it denon mp3 orario traghetti per ischia da napoli porto d armi renato zero san siro intuition e di nuovo natale di g carosone brando giorgi cases capitan commando pjer zalica funk como le gusta temi sfruttamento minorile thepool van cleef zanzibar travel acer 1362 mi scatman john posti di lavoro per disabili fonderia san cataldo se perdo te gigante vimercate netgear dg834g wireless adsl monica bellucci mpeg free dimagrimento re lear mi nuevo amor mg milano apple geforce 6800 ultra ddl daniele di maglie non so piu che cosa sc lettini susy jane 3 ruote studio ragioniere drago irresistibilmente giurisprudenza catanzaro cover dvd libro giungla 2 volo san giovanni rotondo evanescance miris zene valentina pace basado en hechos reales il trapezio della vita playstation nikon 3100 personal finance dvd slim esterno ypsilon km zero hp 344 cartucce samsung rl 39 sony cybershot s90 lg monitor lcd 16 9 f aereo spacer gif I am the main author of FirstGlance in Jmol, a simple, browser-based tool for molecular visualization adopted by Nature Structural and Molecular Biology, among others. FirstGlance is designed to be useful both to novices and to specialists. It works in all popular browsers and platforms, including Internet Explorer or Firefox on Windows, Safari on Mac OSX, and Mozilla Firefox on linux. A hyperlink to FirstGlance can show any PDB file in one click. It is free for all users, and its source code is freely available for others to adapt.
Key views are shown via one-click links from an always-visible control panel: secondary structure, amino and carboxy termini, general composition, hydrophobic vs. polar regions (or cores, using slab mode), charges, and multiple models when present (NMR). Convenience buttons show or hide ligands or water, toggle slab mode, zoom up/down, and change the background color. Help about each view or operation, including color keys, appears automatically, and is always in view.
I am the main author of MolviZ.Org featuring molecular structure tutorials. Beginning in July, 2007, it includes Jmol-based tutorials on DNA Structure, Hemoglobin, Lipid Bilayers and Channels, and Collagen (more coming soon). It also has descriptions and links to all of my molecular visualization websites, including all the other items on this page.
I am a co-author for visualization at the ConSurf Server, which automatically colors amino acids in a 3D protein structure by evolutionary conservation. ConSurf is a project of Nir Ben-Tal and coworkers at Tel-Aviv University, Israel. In August, 2006, we enabled ConSurf to display its results in FirstGlance in Jmol. Previously (since it went into service in 2002) ConSurf's only visualization option was Protein Explorer.
I am the author of an Atlas of Macromolecules, a component of Protein Explorer (PE). In May, 2007, I upgraded the Atlas so that every entry can be visualized with FirstGlance in Jmol as well as with PE.
I am the main author of ProteinExplorer.Org (PE), which is built upon MDL Chime. In early June, 2005, I released a new version that exports molecular views in Jmol. PE's Jmol export mechanism uses Chime command scripts (recorded in PE by javascript developed by TimDriscoll) to produce jmol views as close as possible to the Chime views.
The exported molecular views may be accompanied by text entered into HTML forms and shown as slides to illustrate a talk. Examples are at MolSlides.Org.
PE has the capability to export slides with two adjacent molecular views, intended to be the same, one in Chime, and one in Jmol. This is provided to help identify Chime commands that do not yet work in Jmol. Volunteers to help identify these commands are welcome. Just go to ProteinExplorer.Org, generate some views, save them as MolSlides, and export them to both Chime and Jmol.
In the future, I hope to port PE itself to use Jmol instead of Chime, but that will be a large project!
Contact: emartz AT microbio DOT umass DOT edu
Websites not mentioned above:
- Personal Website
- MolVisIndex.Org: World Index of Molecular Visualization Resources (please enter jmol websites here!)
- molvis-list: Molecular visualization email list.
- PDBLite.Org: Simple search for macromolecular structure data (PDB files).