Difference between revisions of "Sandbox"
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| <center>'''Staggered ethane''' <br /> | | <center>'''Staggered ethane''' <br /> | ||
| − | <jmol><jmolAppletLink><title> | + | <jmol><jmolAppletLink><title>Show in 3D using Jmol(popup window)</title><color>gray</color> |
<uploadedFileContents>ethane_s.pdb</uploadedFileContents></jmolAppletLink> | <uploadedFileContents>ethane_s.pdb</uploadedFileContents></jmolAppletLink> | ||
</jmol> | </jmol> | ||
Revision as of 21:05, 2 December 2008
This is a page for testing.
Jmol extension for MediaWiki
This uses uploadedFileContents tag with an XYZ file:
For some reason, checkboxes are not working with the extension.
Color atoms:
This one uses the inlineContents tag:
| with straight MOL data: |
with added pipe characters (|): |
None of them work. This seems due to a defective parsing of newlines by the extension.
Let's test the same with inline PDB data:
| with straight PDB data: |
with added pipe characters (|): |
The right applet works. The difference with MOL format is likely because MOL requires the lines in a certain order, while PDB relies on the starting keyword. I think that the extension is inserting extra newlines and quotes, that spoil the MOL parser but not the PDB parser. The newlines are ignored by Jmol.js, or replaced by pipes. Manually added pipes restore a proper start of line for the PDB parser. --AngelHerraez 22:11, 30 November 2008 (CET)
Finally, if we insert the MOL data without any newlines and with pipes:
things work, so IT IS the newlines.
Using a pop-up window
An image used for illustration and a caption for requesting the Jmol model:
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