Jmol JavaScript Object/JME/Options

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"Options" parameter for JSME

The default values are shown in bold.

option keywords			description
xButton	NOxButton		Display or not the X button (left side, under the elements)
rButton	NOrButton		Display or not the R button, to mark connection of substituent with the main scaffold (left side, under the elements)
number autonumber	star	noStar	Possibility to mark atoms with a number or a circular highlight. All highlighted atoms will have an atom number equal to 1. The atom numbers are included in the exported SMILES and MOL.
query	NOquery		Display or not the query button, which opens a dialog. In query mode, a SMARTS is generated when a SMILES is requested.
reaction	NOreaction		Enable or disable reaction input, and display or not the reaction button.
atomMoveButton	NOatomMoveButton		Display or not the atom move button.
oldLook	newLook		Style of the toolbar buttons and the interface.
depict	NOdepict		Display only the canvas, without any toolbars for editing (useful for display of structure).
depictAction	NOdepictAction		Allow structure editing in depict mode.
toggle	NOtoggle		Allow to switch automatically between editing and depict modes.
border	NOborder		When in depict mode, displays a border around the molecule.
showDragAndDrop SymbolInDepictMode	NOshowDragAndDrop SymbolInDepictMode		Display or not the drag and drop symbol (blue triangle at lower-right corner) in depict mode.
paste	NOpaste		Enable or not the paste action, including drop of a MOL/RXN; this can be used together with the depict option to have a read-only depiction.
zoom	NOzoom		Allow zooming of the drawing area (mouse wheel).
hydrogens	NOhydrogens		Display or hide hydrogens on heteroatoms.
keepHs	removeHs	removeHsC	Remove hydrogens (all or just those bound to C) when reading a molecule with explicit hydrogens (e.g. from the PubChem database).
stereo	NOstereo		Keep or ignore stereochemistry when generating SMILES.
autoEZ	NOautoEZ		Inclusion of E,Z stereochemistry when generating SMILES.
canonize	NOcanonize		Keep or suppress SMILES canonicalization and detection of aromaticity.
polarNitro	NOpolarNitro		Convert or not nitro (and similar) groups into a nonpolar form.
multiPart	NOmultiPart		Allow to enter multipart structures (display the NEW button).
addNewPart	NOaddNewPart		If multipart is enabled, when reading or pasting a new molecule, add it to the existing molecules or replace these.
useOpenChemLib	NOuseOpenChemLib		Use the OpenChemLib library for SMILES conversion, 2D coordinates computation and SVG export.
exportSVG	NOexportSVG		Display or hide the menu item for exporting SVG (useOpenChemLib must be set).
useOCLidCode	NOuseOCLidCode		Display or hide the menu item for exporting OCL (useOpenChemLib must be set).
exportInChI	NOexportInChI		Display or hide the menu item for exporting InChI
exportInChIauxInfo	NOexportInChIauxInfo		Display or hide the menu item for exporting InChI AuxInfo.
exportInChIkey	NOexportInChIkey		Display or hide the menu item for exporting InChI key
searchInChIkey	NOsearchInChIkey		Display or hide the menu item for searching on the web using the current InChI key.

Contributors

AngelHerraez