Difference between revisions of "Videos"
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These videos feature biochemical structures rendered in JSmol | These videos feature biochemical structures rendered in JSmol | ||
* [https://www.youtube.com/watch?v=Q1ftYq13XKk Ramachandran Principle: Protein Atomic Clashes vs. Phi & Psi]. 9 min. 38K Views in January, 2021. | * [https://www.youtube.com/watch?v=Q1ftYq13XKk Ramachandran Principle: Protein Atomic Clashes vs. Phi & Psi]. 9 min. 38K Views in January, 2021. | ||
| + | * [https://www.youtube.com/watch?v=2ZakngfbHSo Major Histocompatibility Complex (MHC)] with Quiz. 25 min. | ||
| + | * [https://www.youtube.com/watch?v=ELZ4030Lyv4 Antibody Structure vs. Function]: Immunoglobulin Domains; Heavy & Light Chains; Fab, Fc, CDRs, Epitope, Paratope; Glycosylation. 25 min. | ||
===Jmol Android=== | ===Jmol Android=== | ||
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===Pockets And Cavities Using Pseudoatoms in Proteins (PACUPP)=== | ===Pockets And Cavities Using Pseudoatoms in Proteins (PACUPP)=== | ||
[http://molviz.org/pacupp PACUPP] is an application written entirely in Jmol command language. | [http://molviz.org/pacupp PACUPP] is an application written entirely in Jmol command language. | ||
| − | * [https://www.youtube.com/watch?v=rhGBX_3vNFA Video on how to use PACUPP] with several examples. Also touches briefly on [http://firstglance.jmol.org FirstGlance in Jmol]. | + | * [https://www.youtube.com/watch?v=rhGBX_3vNFA Video on how to use PACUPP] with several examples. Also touches briefly on [http://firstglance.jmol.org FirstGlance in Jmol]. 43 min with timed links to jump to examples of interest. |
Latest revision as of 21:03, 3 January 2021
Contents
Jmol Videos
Videos showing Jmol in action, on YouTube or other places.
Please contribute your videos or those you find!
Educational Videos on Protein Structure
These videos feature biochemical structures rendered in JSmol
- Ramachandran Principle: Protein Atomic Clashes vs. Phi & Psi. 9 min. 38K Views in January, 2021.
- Major Histocompatibility Complex (MHC) with Quiz. 25 min.
- Antibody Structure vs. Function: Immunoglobulin Domains; Heavy & Light Chains; Fab, Fc, CDRs, Epitope, Paratope; Glycosylation. 25 min.
Jmol Android
A special version of Jmol running in Android
- http://www.youtube.com/watch?v=og-lXFnDU-w basic functionality: display, rotate the model with your finger.
- http://www.youtube.com/watch?v=JPwvCmD5IDg accelerometer support: shake the tablet to start the model spinning; reorient the model depending on the position of the tablet.
- http://www.youtube.com/watch?v=D7uOkhoJ0Oc gyroscope support: moving the tablet either changes the model orientation or sets it spinning.
Molecular Playground
For public displays, Jmol may run in kiosk mode. Here, passers-by can move the model being projected on a screen or the wall, just by waving their hands.
- http://www.youtube.com/watch?v=iQRkuku8ry0
- http://www.youtube.com/watch?v=3uBqnVs2ywc
- http://www.youtube.com/watch?v=XCRrRZe1j6g passing by (equivalent to swipe on a tablet) puts the model to spin
Pockets And Cavities Using Pseudoatoms in Proteins (PACUPP)
PACUPP is an application written entirely in Jmol command language.
- Video on how to use PACUPP with several examples. Also touches briefly on FirstGlance in Jmol. 43 min with timed links to jump to examples of interest.
