Difference between revisions of "User:EricMartz"
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− | I am the main author of [http://firstglance.jmol.org FirstGlance in Jmol], a simple, browser-based tool for molecular visualization adopted by ''[http://www.nature.com/nsmb Nature Structural and Molecular Biology]'', among [http://firstglance.jmol.org/adoption.htm others]. FirstGlance is designed to be useful both to novices and to specialists. It works in all popular browsers and platforms, including Internet Explorer or Firefox on Windows, Safari on Mac OSX, and Mozilla Firefox on linux. A hyperlink to FirstGlance can show any PDB file in one click. It is free for all users, and its source code is freely available for others to adapt. | + | [http://psisemiya.com/images/small/gabicce-mare/ gabicce mare vacanza] [http://kinunia.cn/felpa-converse.htm felpa converse] [http://amohseni.info/img/styles/alloggio-ibiza/ alloggio ibiza] [http://psisemiya.com/images/small/chicco-triciclo/ chicco triciclo] [http://ustall.org/web/combo-lettore.htm combo lettore dvd vcr] [http://bloprofeldi.info/lib/televisori-schermo.htm televisori schermo piatto] [http://davte.info/library/html/volo-gran.htm volo gran bretagna] [http://bloprofeldi.info/lib/che-guevara.htm che guevara] [http://saibso.org/mont-saint.htm mont saint michel] [http://chaba.info/inquinamento-a/ inquinamento a kabul] [http://helmed.info/topic/gaggia-gelateria/ gaggia gelateria] [http://kinunia.cn/bensley.htm bensley] [http://nobinters.org/hitachi.htm hitachi 1 8] [http://kinunia.cn/l-aquila.htm l aquila] [http://psisemiya.com/images/small/autisti/ autisti] [http://helmed.info/topic/zoccola-matura/ zoccola matura] [http://kinunia.cn/sigma-obiettivi.htm sigma obiettivi nikon fotocamere] [http://ustall.org/web/deux-ange.htm deux ange kool shen] [http://psisemiya.com/images/small/foliesdepigalle/ foliesdepigalle] [http://chaba.info/panasonic-dmcfzeg/ panasonic dmc-fz30eg] [http://davte.info/library/html/ha-kieu.htm ha kieu a] [http://chaba.info/mercedes-/ mercedes 350 cls] [http://bloprofeldi.info/lib/hp-photosmart.htm hp photosmart p1000] [http://kinunia.cn/sito-internet.htm sito internet caserta] [http://saibso.org/giuseppe-tubi.htm giuseppe tubi arte digitale] [http://amohseni.info/img/styles/lo-scioglimento/ lo scioglimento dei ghiacciai] [http://helmed.info/topic/www-clickar/ www clickar it] [http://saibso.org/gelait.htm gelait] [http://ustall.org/web/stampante-canon.htm stampante canon 3200 laser] [http://psisemiya.com/images/small/raphael-saadiq/ raphael saadiq instant vintage] [http://amohseni.info/img/styles/bmw/ bmw 328] [http://helmed.info/topic/triplite/ triplite] [http://bloprofeldi.info/lib/acer-ferrari.htm acer -ferrari 4005] [http://psisemiya.com/images/small/na-raz/ na raz] [http://nobinters.org/george-montgomery.htm george montgomery] [http://amohseni.info/img/styles/l-italiano/ l italiano toto] [http://psisemiya.com/images/small/lacie-d/ lacie d2 hard drive 160gb serial ata] [http://davte.info/library/html/spagna.htm spagna 1982] [http://helmed.info/topic/shup-up/ shup up] [http://helmed.info/topic/showgirl-italiana/ showgirl italiana varia d f] [http://helmed.info/topic/biscotti-a/ biscotti a forma umana] [http://ustall.org/web/heino.htm heino] [http://ashythro.info/library/html/impianti-surround/ impianti surround 2 1] [http://helmed.info/topic/www-mercedes/ www mercedes benz de] [http://amohseni.info/img/styles/brancati-vitaliano/ brancati, vitaliano] [http://saibso.org/vips.htm vips] [http://ustall.org/web/mia-bela.htm mia bela madunina] [http://ashythro.info/library/html/accordi-de/ accordi de andre] [http://amohseni.info/img/styles/raconti/ raconti] [http://psisemiya.com/images/small/estrazionidel-lotto/ estrazionidel lotto] [http://nobinters.org/syusy-blady.htm syusy blady] [http://helmed.info/topic/cartoline-virtuali/ cartoline virtuali musicali] [http://chaba.info/freek/ freek] [http://bloprofeldi.info/lib/banca-popolare.htm banca popolare verona] [http://helmed.info/topic/the-blanc/ the blanc] [http://saibso.org/batterie-alcaline.htm batterie alcaline] [http://ustall.org/web/movie-pamella.htm movie pamella anderson free] [http://helmed.info/topic/an/ an-] [http://kinunia.cn/jag-midi.htm jag midi] [http://ustall.org/web/mercedes-livorno.htm mercedes livorno] [http://chaba.info/testo-gianluca/ testo gianluca grignani] [http://psisemiya.com/images/small/audigy-bulk/ audigy bulk] [http://davte.info/library/html/tammorriata.htm tammorriata] [http://davte.info/library/html/guerlain-vetiver.htm guerlain vetiver] [http://bloprofeldi.info/lib/regione-calabria.htm 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[http://psisemiya.com/images/small/porta-napoli/ porta napoli] [http://chaba.info/land-rover/ land rover discovery se] [http://amohseni.info/img/styles/my-architect/ my architect] [http://psisemiya.com/images/small/tu-eres/ tu eres ajena testo] [http://nobinters.org/jesus-son.htm jesus son] [http://amohseni.info/img/styles/lanciare-i/ lanciare i sassi] [http://helmed.info/topic/classe-a/ classe a 170] [http://psisemiya.com/images/small/prato-in/ prato in web] [http://bloprofeldi.info/lib/vaio-sony.htm vaio sony s4xp] [http://davte.info/library/html/lg-dvd.htm lg dvd home teatre] [http://ustall.org/web/ati-.htm ati 9600 pro 256 mb] [http://amohseni.info/img/styles/incd-cd/ incd cd rw] [http://psisemiya.com/images/small/pioneer-dehpmp/ pioneer deh-p7700mp deh] [http://chaba.info/trova-film/ trova film citta] [http://kinunia.cn/soul-edge.htm soul edge] [http://ustall.org/web/woofer-tweeter.htm woofer tweeter] [http://psisemiya.com/images/small/www-four/ www four 11 com] [http://ustall.org/web/cris-bel.htm cris bel] [http://ustall.org/web/giochi-online.htm giochi on-line gratis] [http://kinunia.cn/gallo-capo.htm gallo, capo-] [http://ashythro.info/library/html/concorsi-su/ concorsi su bolletino ufficiale della regione abruzzo] [http://ustall.org/web/curriculm-europeo.htm curriculm europeo] [http://saibso.org/grabster.htm grabster 250] [http://chaba.info/la-bestia/ la bestia nello spazio] [http://chaba.info/philips-pis/ philips 200p6is] [http://ashythro.info/library/html/parabole-sat/ parabole sat] [http://chaba.info/laser-c/ laser c3200] [http://bloprofeldi.info/lib/seduzioni.htm seduzioni] [http://davte.info/library/html/provinciadi-benevento.htm provinciadi benevento] [http://psisemiya.com/images/small/cover-paola/ cover paola turci] [http://amohseni.info/img/styles/stivali-cuoio/ stivali cuoio] [http://bloprofeldi.info/lib/hits-of.htm hits of the 90s. classic music video] [http://amohseni.info/img/styles/panini/ panini] [http://chaba.info/claire/ claire] [http://kinunia.cn/sito-di.htm sito di italia lavoro] [http://amohseni.info/img/styles/hotels-pisa/ hotels pisa] [http://saibso.org/la-lunga.htm la lunga attesa] [http://amohseni.info/img/styles/volontario-in/ volontario in africa] [http://saibso.org/stadio-equilibrio.htm stadio equilibrio istabile] [http://chaba.info/video-jack/ video jack straw] [http://saibso.org/nidi-d.htm nidi d infanzia privati] [http://helmed.info/topic/non-riuscire/ non riuscire a dimagrire] [http://amohseni.info/img/styles/istiruto-materno/ istiruto materno infantile] [http://bloprofeldi.info/lib/campane.htm campane] [http://chaba.info/accessori-per/ accessori per palmari hp screen] [http://bloprofeldi.info/lib/canzoni-religiose.htm canzoni religiose] [http://amohseni.info/img/styles/fluidi-non/ fluidi non newtoniani] [http://davte.info/library/html/canto-per.htm canto per cristo] [http://ustall.org/web/jeep-nuova.htm jeep nuova grand cherokee 2005] [http://amohseni.info/img/styles/fighter/ fighter 2] [http://kinunia.cn/e-toshiba.htm e740 toshiba palmari] [http://psisemiya.com/images/small/agatha-christie/ agatha christie collection] [http://kinunia.cn/torte-ricetta.htm torte ricetta] I am the main author of [http://firstglance.jmol.org FirstGlance in Jmol], a simple, browser-based tool for molecular visualization adopted by ''[http://www.nature.com/nsmb Nature Structural and Molecular Biology]'', among [http://firstglance.jmol.org/adoption.htm others]. FirstGlance is designed to be useful both to novices and to specialists. It works in all popular browsers and platforms, including Internet Explorer or Firefox on Windows, Safari on Mac OSX, and Mozilla Firefox on linux. A hyperlink to FirstGlance can show any PDB file in one click. It is free for all users, and its source code is freely available for others to adapt. |
Key views are shown via one-click links from an always-visible control panel: secondary structure, amino and carboxy termini, general composition, hydrophobic vs. polar regions (or cores, using slab mode), charges, and multiple models when present (NMR). Convenience buttons show or hide ligands or water, toggle slab mode, zoom up/down, and change the background color. Help about each view or operation, including color keys, appears automatically, and is always in view. | Key views are shown via one-click links from an always-visible control panel: secondary structure, amino and carboxy termini, general composition, hydrophobic vs. polar regions (or cores, using slab mode), charges, and multiple models when present (NMR). Convenience buttons show or hide ligands or water, toggle slab mode, zoom up/down, and change the background color. Help about each view or operation, including color keys, appears automatically, and is always in view. |
Revision as of 22:02, 16 August 2007
gabicce mare vacanza felpa converse alloggio ibiza chicco triciclo combo lettore dvd vcr televisori schermo piatto volo gran bretagna che guevara mont saint michel inquinamento a kabul gaggia gelateria bensley hitachi 1 8 l aquila autisti zoccola matura sigma obiettivi nikon fotocamere deux ange kool shen foliesdepigalle panasonic dmc-fz30eg ha kieu a mercedes 350 cls hp photosmart p1000 sito internet caserta giuseppe tubi arte digitale lo scioglimento dei ghiacciai www clickar it gelait stampante canon 3200 laser raphael saadiq instant vintage bmw 328 triplite acer -ferrari 4005 na raz george montgomery l italiano toto lacie d2 hard drive 160gb serial ata spagna 1982 shup up showgirl italiana varia d f biscotti a forma umana heino impianti surround 2 1 www mercedes benz de brancati, vitaliano vips mia bela madunina accordi de andre raconti estrazionidel lotto syusy blady cartoline virtuali musicali freek banca popolare verona the blanc batterie alcaline movie pamella anderson free an- jag midi mercedes livorno testo gianluca grignani audigy bulk tammorriata guerlain vetiver regione calabria it ristoranti ferrara winguard pro cooperativa arcore 94 ozonosfera videocamere 0 avana shopping box scart stereo hi-fi idropulitrice valex philips hq 9190 xxx frre canon 50 sintoamplificatore yamaha amplificatori grandinare esami del patentino spalla atleta tv lcd monitor 19 orientamento politico schede madri xeon samsung le 20 new rnb folliero calderara di reno norme edilizie lg desktop 3 0 standfast canon xm2 batterie samsung z300 maciste contro i mongoli keyword demon grown www ghoogle it www xxl ro ristorante sicilia in bocca robert wagner il film al calar delle tenebre in dvd free porn website powerbook g4 17 17 autocostruzione subwofer www infiore it lifestyle italia hifi lavatrici bosch 1660 grecia last minute voli obiettivo nikon af 70 300 briney desnuda maradona blus lotto creo 2.2 eos 350d con ef-s 18-55 mm case vacanza jesolo ja ce credo swat 3 video piedi 3x2 otello deve morire x-fi xtrememusic richie poveri le ore fonderia crespi lmm fotocamera digitale acer mtaa 4513 v offerta cartuccia corrado fortuna tracce temi esame stato donne in bikini niepokonani perfekt csi crime scene investigation il film fajne techno copy maria tailer immagini talpa con paola perego il mio consiglio gran turismo 3 keanu reeves foto sexy di anna valle corse di slitte thatthingyoudo hero trailer every body s full natale per pianoforte gurjevsk assicurazione new york mp3 512mb creative muvo n200 corsa con le macchine porta napoli land rover discovery se my architect tu eres ajena testo jesus son lanciare i sassi classe a 170 prato in web vaio sony s4xp lg dvd home teatre ati 9600 pro 256 mb incd cd rw pioneer deh-p7700mp deh trova film citta soul edge woofer tweeter www four 11 com cris bel giochi on-line gratis gallo, capo- concorsi su bolletino ufficiale della regione abruzzo curriculm europeo grabster 250 la bestia nello spazio philips 200p6is parabole sat laser c3200 seduzioni provinciadi benevento cover paola turci stivali cuoio hits of the 90s. classic music video panini claire sito di italia lavoro hotels pisa la lunga attesa volontario in africa stadio equilibrio istabile video jack straw nidi d infanzia privati non riuscire a dimagrire istiruto materno infantile campane accessori per palmari hp screen canzoni religiose fluidi non newtoniani canto per cristo jeep nuova grand cherokee 2005 fighter 2 e740 toshiba palmari agatha christie collection torte ricetta I am the main author of FirstGlance in Jmol, a simple, browser-based tool for molecular visualization adopted by Nature Structural and Molecular Biology, among others. FirstGlance is designed to be useful both to novices and to specialists. It works in all popular browsers and platforms, including Internet Explorer or Firefox on Windows, Safari on Mac OSX, and Mozilla Firefox on linux. A hyperlink to FirstGlance can show any PDB file in one click. It is free for all users, and its source code is freely available for others to adapt.
Key views are shown via one-click links from an always-visible control panel: secondary structure, amino and carboxy termini, general composition, hydrophobic vs. polar regions (or cores, using slab mode), charges, and multiple models when present (NMR). Convenience buttons show or hide ligands or water, toggle slab mode, zoom up/down, and change the background color. Help about each view or operation, including color keys, appears automatically, and is always in view.
I am the main author of MolviZ.Org featuring molecular structure tutorials. Beginning in July, 2007, it includes Jmol-based tutorials on DNA Structure, Hemoglobin, Lipid Bilayers and Channels, and Collagen (more coming soon). It also has descriptions and links to all of my molecular visualization websites, including all the other items on this page.
I am a co-author for visualization at the ConSurf Server, which automatically colors amino acids in a 3D protein structure by evolutionary conservation. ConSurf is a project of Nir Ben-Tal and coworkers at Tel-Aviv University, Israel. In August, 2006, we enabled ConSurf to display its results in FirstGlance in Jmol. Previously (since it went into service in 2002) ConSurf's only visualization option was Protein Explorer.
I am the author of an Atlas of Macromolecules, a component of Protein Explorer (PE). In May, 2007, I upgraded the Atlas so that every entry can be visualized with FirstGlance in Jmol as well as with PE.
I am the main author of ProteinExplorer.Org (PE), which is built upon MDL Chime. In early June, 2005, I released a new version that exports molecular views in Jmol. PE's Jmol export mechanism uses Chime command scripts (recorded in PE by javascript developed by TimDriscoll) to produce jmol views as close as possible to the Chime views.
The exported molecular views may be accompanied by text entered into HTML forms and shown as slides to illustrate a talk. Examples are at MolSlides.Org.
PE has the capability to export slides with two adjacent molecular views, intended to be the same, one in Chime, and one in Jmol. This is provided to help identify Chime commands that do not yet work in Jmol. Volunteers to help identify these commands are welcome. Just go to ProteinExplorer.Org, generate some views, save them as MolSlides, and export them to both Chime and Jmol.
In the future, I hope to port PE itself to use Jmol instead of Chime, but that will be a large project!
Contact: emartz AT microbio DOT umass DOT edu
Websites not mentioned above:
- Personal Website
- MolVisIndex.Org: World Index of Molecular Visualization Resources (please enter jmol websites here!)
- molvis-list: Molecular visualization email list.
- PDBLite.Org: Simple search for macromolecular structure data (PDB files).