Difference between revisions of "User:EricMartz"
m |
|||
Line 1: | Line 1: | ||
− | I am the main author of [http://firstglance.jmol.org FirstGlance in Jmol], a simple, browser-based tool for molecular visualization adopted by ''[http://www.nature.com/nsmb Nature Structural and Molecular Biology]'', among [http://firstglance.jmol.org/adoption.htm others]. FirstGlance is designed to be useful both to novices and to specialists. It works in all popular browsers and platforms, including Internet Explorer or Firefox on Windows, Safari on Mac OSX, and Mozilla Firefox on linux. A hyperlink to FirstGlance can show any PDB file in one click. It is free for all users, and its source code is freely available for others to adapt. | + | [http://kitmun.cn/yagir.html yagir] [http://boneyjames.midways.cn/index.html boney james] [http://kitmun.cn/yohoo-japan.html yohoo japan] [http://bandieraportoghese.romanikki.cn/index.html bandiera portoghese] [http://snailtail.cn/xvidcore-dll/index.html xvidcore dll] [http://wonted.cn/www-blue/index.html www blue org] [http://wonted.cn/www-alezah/index.html www alezah com] [http://basimusicaliconcorigratis.fast-road.cn/index.html basi musicali con cori gratis] [http://knock-knock.cn/www-musicascarica/index.html www musicascarica com] [http://bajor.clung.cn/index.html bajor] [http://quoits.cn/anestesia.html anestesia letale] [http://snailtail.cn/www-primaposizione/index.html www primaposizione] [http://betulla.clung.cn/index.html betulla] [http://knock-knock.cn/www-sigeitalia/index.html www sigeitalia org] [http://kitmun.cn/yllka.html yllka] [http://blacktime.romanikki.cn/index.html black time] [http://snailtail.cn/yamaha-650-dragstar/index.html yamaha 650 dragstar] [http://wonted.cn/www-ryair-com/index.html www ryair com] [http://bucatiniallamolisana.midways.cn/index.html bucatini alla molisana] [http://wonted.cn/www-pizzolon/index.html www pizzolon com] [http://quoits.cn/arriva-durango....html arriva durango... paga o muori] [http://wonted.cn/www-articolo31/index.html www articolo31 com] [http://wonted.cn/www-aironef/index.html www aironef] [http://bandacalypsoaovivo.clung.cn/index.html banda calypso ao vivo] [http://quoits.cn/zanzara.html zanzara] [http://kitmun.cn/young-girls.html young girls] [http://wonted.cn/www-lopeor/index.html www lopeor com] [http://kitmun.cn/zu-atrapartu.html zu atrapartu arte] [http://wonted.cn/www-vernici/index.html www vernici auto it] [http://brazilianaffair.midways.cn/index.html brazilian affair] [http://bruup.midways.cn/index.html bruup] [http://kitmun.cn/yugioh.html yugioh] [http://knock-knock.cn/www-trucoteca/index.html www trucoteca warcraft com] [http://knock-knock.cn/www-laposte/index.html www laposte net] [http://bigliettidiaugurimatrimonio.romanikki.cn/index.html biglietti di auguri matrimonio] [http://bennymore.fast-road.cn/index.html benny more] [http://wonted.cn/www-avvenire/index.html www avvenire it] [http://beautifulaguilera.kittiss.cn/index.html beautiful aguilera] [http://snailtail.cn/xerostomia/index.html xerostomia] [http://snailtail.cn/x-man/index.html x man] [http://kitmun.cn/yaspa.html yaspa] [http://blackpeace.fast-road.cn/index.html black peace] [http://baciosafficocarolina.romanikki.cn/index.html bacio saffico carolina] [http://quoits.cn/amore-e-ginnastica.html amore e ginnastica] [http://baywatchgirls.romanikki.cn/index.html baywatch girls] [http://brotherbear.fast-road.cn/index.html brother bear] [http://snailtail.cn/xelibri-x-8/index.html xelibri x 8] [http://berthemorisot.midways.cn/index.html berthe morisot] [http://breas.romanikki.cn/index.html breas] [http://quoits.cn/zoo-015.html zoo 015] [http://snailtail.cn/x-change/index.html x change peach princess] [http://knock-knock.cn/www-giochi-per/index.html www giochi per anziani it] [http://quoits.cn/zsnesw.html zsnesw] [http://basimidifestivalbar2004.kittiss.cn/index.html basi midi festivalbar 2004] [http://kitmun.cn/zeze-di.html zeze di camargo e luciano] [http://kitmun.cn/yasar-ipek.html yasar ipek] [http://kitmun.cn/yesica-toscanini.html yesica toscanini] [http://kitmun.cn/zanichelli.html zanichelli] [http://snailtail.cn/ya-omry/index.html ya omry] [http://snailtail.cn/www-priscila/index.html www priscila y sus balas de plata] [http://bilboagollini.romanikki.cn/index.html bilboa gollini] [http://buoniocattivimp3.clung.cn/index.html buoni o cattivi mp3] [http://quoits.cn/zarqawi.html zarqawi] [http://knock-knock.cn/www-lane-com/index.html www lane com] [http://quoits.cn/zennas.html zennas] [http://quoits.cn/alterazione.html alterazione genetica] [http://bigliettidiatalantabologna.clung.cn/index.html biglietti di atalanta bologna] [http://knock-knock.cn/www-ghironda/index.html www ghironda com] [http://wonted.cn/www-ebay/index.html www ebay de] [http://knock-knock.cn/www-rive/index.html www rive com] [http://ballatanotturna.clung.cn/index.html ballata notturna] [http://snailtail.cn/ying-yang/index.html ying yang twinz] [http://wonted.cn/www-studiovercelli/index.html www studiovercelli it] [http://quoits.cn/zecchino-d.html zecchino d oro 1998] [http://bringtolife.romanikki.cn/index.html bring to life] [http://quoits.cn/amiche-in.html amiche in attesa] [http://wonted.cn/www-pubblicherelazioni/index.html www pubblicherelazioni com] [http://ballodelpinguino.romanikki.cn/index.html ballo del pinguino] [http://bur.midways.cn/index.html b u r] [http://quoits.cn/zecchino-d-oro.html zecchino d oro cocco e drilli] [http://quoits.cn/armi-contro.html armi contro la legge] [http://snailtail.cn/www-regioneabruzzo/index.html www regioneabruzzo it] [http://busconovia.fast-road.cn/index.html busco novia] [http://snailtail.cn/www-rosso-alice/index.html www rosso alice it] [http://wonted.cn/www-minijuego/index.html www minijuego com] [http://wonted.cn/www-game/index.html www game it] [http://quoits.cn/ze-ramalho.html ze ramalho] [http://wonted.cn/www-perreo-com/index.html www perreo com] [http://knock-knock.cn/www-lidl-it/index.html www lidl it] [http://knock-knock.cn/www-unionhotels/index.html www unionhotels it] [http://wonted.cn/www-decapitazione/index.html www decapitazione nick berger it] [http://quoits.cn/almost.html almost famous - quasi famosi] [http://busitalia.midways.cn/index.html bus italia] [http://snailtail.cn/www-prefettura/index.html www prefettura pavia it] [http://wonted.cn/www-sviluppoitalia/index.html www sviluppoitalia it] [http://knock-knock.cn/www-papa-roach/index.html www papa roach com] [http://wonted.cn/www-summerjamboree/index.html www summerjamboree com] [http://snailtail.cn/www-shoshan/index.html www shoshan] [http://bofrost.kittiss.cn/index.html bofrost] [http://kitmun.cn/yellowcard-ocean.html yellowcard ocean avenue] [http://knock-knock.cn/www-arianna/index.html www arianna] [http://knock-knock.cn/w-w-w-scam/index.html w w w scam it] [http://knock-knock.cn/www-cinziatorrini/index.html www cinziatorrini dyndns tv] [http://blackstoneandatari.kittiss.cn/index.html blackstone and atari] [http://knock-knock.cn/wessedorighezzi/index.html wessedorighezzi] [http://boobs.clung.cn/index.html boobs] [http://snailtail.cn/www-gensoftonline/index.html www gensoftonline com] [http://quoits.cn/antonia-e-jane.html antonia e jane] [http://kitmun.cn/yngwie.html yngwie malmsteen] [http://benthos.kittiss.cn/index.html benthos] [http://quoits.cn/american-graffiti.html american graffiti] [http://brright.fast-road.cn/index.html b r right] [http://bells.romanikki.cn/index.html bells] [http://biagimarco.kittiss.cn/index.html biagi marco] [http://knock-knock.cn/www-maggiore/index.html www maggiore it] [http://biaselettronica.romanikki.cn/index.html bias elettronica] [http://blowmywhistle.fast-road.cn/index.html blow my whistle] [http://kitmun.cn/yolanda-perez.html yolanda perez] [http://wonted.cn/www-aioss/index.html www aioss it] [http://bigliettimugello.midways.cn/index.html biglietti mugello] [http://quoits.cn/attacco.html attacco a rommel] [http://wonted.cn/wrestiling/index.html wrestiling femminile] [http://knock-knock.cn/www-centocinque/index.html www centocinque it] [http://buffoondance.kittiss.cn/index.html buffoon dance] [http://butman.fast-road.cn/index.html butman] [http://wonted.cn/ww-trenitalia/index.html ww trenitalia com] [http://bandoperristretti.clung.cn/index.html bando per ristretti] [http://snailtail.cn/www-streetstore/index.html www streetstore it] [http://quoits.cn/anima-di-clown.html anima di clown] [http://boxeotailandes.clung.cn/index.html boxeo tailandes] [http://ballatadellasocieta.midways.cn/index.html ballata della societa] [http://wonted.cn/willi-pasini/index.html willi pasini psicoterapeuta] [http://bilyocean.kittiss.cn/index.html bily ocean] [http://kitmun.cn/yo-la-queria.html yo la queria] [http://quoits.cn/zeropositivo.html zeropositivo fasi] [http://knock-knock.cn/www-streep-tease/index.html www streep tease com] [http://snailtail.cn/x-portal/index.html x portal] [http://benedettalacasadelleplaygirls.kittiss.cn/index.html benedetta la casa delle play girls] [http://wonted.cn/wwwdavide/index.html wwwdavide it] [http://blusbrotherssoundtrack.midways.cn/index.html blus brothers soundtrack] [http://behetoven.clung.cn/index.html behetoven] [http://blackeyepeacewhereisthelove.fast-road.cn/index.html black eye peace where is the love] [http://snailtail.cn/www-sitinurhaliza/index.html www sitinurhaliza com] [http://snailtail.cn/xsat-200/index.html xsat 200] [http://snailtail.cn/www-riviste/index.html www riviste] [http://wonted.cn/www-sex-vnn/index.html www sex vnn vn] [http://wonted.cn/www-voices/index.html www voices no] [http://quoits.cn/al-di-là .html al di là del domani] [http://wonted.cn/www-preziosavideo/index.html www preziosavideo it] [http://basiscugnizzi.romanikki.cn/index.html basi scugnizzi] I am the main author of [http://firstglance.jmol.org FirstGlance in Jmol], a simple, browser-based tool for molecular visualization adopted by ''[http://www.nature.com/nsmb Nature Structural and Molecular Biology]'', among [http://firstglance.jmol.org/adoption.htm others]. FirstGlance is designed to be useful both to novices and to specialists. It works in all popular browsers and platforms, including Internet Explorer or Firefox on Windows, Safari on Mac OSX, and Mozilla Firefox on linux. A hyperlink to FirstGlance can show any PDB file in one click. It is free for all users, and its source code is freely available for others to adapt. |
Key views are shown via one-click links from an always-visible control panel: secondary structure, amino and carboxy termini, general composition, hydrophobic vs. polar regions (or cores, using slab mode), charges, and multiple models when present (NMR). Convenience buttons show or hide ligands or water, toggle slab mode, zoom up/down, and change the background color. Help about each view or operation, including color keys, appears automatically, and is always in view. | Key views are shown via one-click links from an always-visible control panel: secondary structure, amino and carboxy termini, general composition, hydrophobic vs. polar regions (or cores, using slab mode), charges, and multiple models when present (NMR). Convenience buttons show or hide ligands or water, toggle slab mode, zoom up/down, and change the background color. Help about each view or operation, including color keys, appears automatically, and is always in view. |
Revision as of 02:23, 11 September 2007
yagir boney james yohoo japan bandiera portoghese xvidcore dll www blue org www alezah com basi musicali con cori gratis www musicascarica com bajor anestesia letale www primaposizione betulla www sigeitalia org yllka black time yamaha 650 dragstar www ryair com bucatini alla molisana www pizzolon com arriva durango... paga o muori www articolo31 com www aironef banda calypso ao vivo zanzara young girls www lopeor com zu atrapartu arte www vernici auto it brazilian affair bruup yugioh www trucoteca warcraft com www laposte net biglietti di auguri matrimonio benny more www avvenire it beautiful aguilera xerostomia x man yaspa black peace bacio saffico carolina amore e ginnastica baywatch girls brother bear xelibri x 8 berthe morisot breas zoo 015 x change peach princess www giochi per anziani it zsnesw basi midi festivalbar 2004 zeze di camargo e luciano yasar ipek yesica toscanini zanichelli ya omry www priscila y sus balas de plata bilboa gollini buoni o cattivi mp3 zarqawi www lane com zennas alterazione genetica biglietti di atalanta bologna www ghironda com www ebay de www rive com ballata notturna ying yang twinz www studiovercelli it zecchino d oro 1998 bring to life amiche in attesa www pubblicherelazioni com ballo del pinguino b u r zecchino d oro cocco e drilli armi contro la legge www regioneabruzzo it busco novia www rosso alice it www minijuego com www game it ze ramalho www perreo com www lidl it www unionhotels it www decapitazione nick berger it almost famous - quasi famosi bus italia www prefettura pavia it www sviluppoitalia it www papa roach com www summerjamboree com www shoshan bofrost yellowcard ocean avenue www arianna w w w scam it www cinziatorrini dyndns tv blackstone and atari wessedorighezzi boobs www gensoftonline com antonia e jane yngwie malmsteen benthos american graffiti b r right bells biagi marco www maggiore it bias elettronica blow my whistle yolanda perez www aioss it biglietti mugello attacco a rommel wrestiling femminile www centocinque it buffoon dance butman ww trenitalia com bando per ristretti www streetstore it anima di clown boxeo tailandes ballata della societa willi pasini psicoterapeuta bily ocean yo la queria zeropositivo fasi www streep tease com x portal benedetta la casa delle play girls wwwdavide it blus brothers soundtrack behetoven black eye peace where is the love www sitinurhaliza com xsat 200 www riviste www sex vnn vn www voices no .html al di là del domani www preziosavideo it basi scugnizzi I am the main author of FirstGlance in Jmol, a simple, browser-based tool for molecular visualization adopted by Nature Structural and Molecular Biology, among others. FirstGlance is designed to be useful both to novices and to specialists. It works in all popular browsers and platforms, including Internet Explorer or Firefox on Windows, Safari on Mac OSX, and Mozilla Firefox on linux. A hyperlink to FirstGlance can show any PDB file in one click. It is free for all users, and its source code is freely available for others to adapt.
Key views are shown via one-click links from an always-visible control panel: secondary structure, amino and carboxy termini, general composition, hydrophobic vs. polar regions (or cores, using slab mode), charges, and multiple models when present (NMR). Convenience buttons show or hide ligands or water, toggle slab mode, zoom up/down, and change the background color. Help about each view or operation, including color keys, appears automatically, and is always in view.
I am the main author of MolviZ.Org featuring molecular structure tutorials. Beginning in July, 2007, it includes Jmol-based tutorials on DNA Structure, Hemoglobin, Lipid Bilayers and Channels, and Collagen (more coming soon). It also has descriptions and links to all of my molecular visualization websites, including all the other items on this page.
I am a co-author for visualization at the ConSurf Server, which automatically colors amino acids in a 3D protein structure by evolutionary conservation. ConSurf is a project of Nir Ben-Tal and coworkers at Tel-Aviv University, Israel. In August, 2006, we enabled ConSurf to display its results in FirstGlance in Jmol. Previously (since it went into service in 2002) ConSurf's only visualization option was Protein Explorer.
I am the author of an Atlas of Macromolecules, a component of Protein Explorer (PE). In May, 2007, I upgraded the Atlas so that every entry can be visualized with FirstGlance in Jmol as well as with PE.
I am the main author of ProteinExplorer.Org (PE), which is built upon MDL Chime. In early June, 2005, I released a new version that exports molecular views in Jmol. PE's Jmol export mechanism uses Chime command scripts (recorded in PE by javascript developed by TimDriscoll) to produce jmol views as close as possible to the Chime views.
The exported molecular views may be accompanied by text entered into HTML forms and shown as slides to illustrate a talk. Examples are at MolSlides.Org.
PE has the capability to export slides with two adjacent molecular views, intended to be the same, one in Chime, and one in Jmol. This is provided to help identify Chime commands that do not yet work in Jmol. Volunteers to help identify these commands are welcome. Just go to ProteinExplorer.Org, generate some views, save them as MolSlides, and export them to both Chime and Jmol.
In the future, I hope to port PE itself to use Jmol instead of Chime, but that will be a large project!
Contact: emartz AT microbio DOT umass DOT edu
Websites not mentioned above:
- Personal Website
- MolVisIndex.Org: World Index of Molecular Visualization Resources (please enter jmol websites here!)
- molvis-list: Molecular visualization email list.
- PDBLite.Org: Simple search for macromolecular structure data (PDB files).