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| − | {{Running_Jmol_Sections}}
| + | Content moved to [[Jmol in Wikis and Blogs]] |
| − | == Jmol in Wiki's ==
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| − | The [[Jmol Applet]] can be embedded in Wiki pages, like in HTML pages. Below are four processors for four different Wiki engines ([[MediaWiki]], MoinMoin, MoniWiki and UniWakka).
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| − | === Jmol in DokuWiki ===
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| − | A [http://wiki.symplus.co.jp/doku.php/computer/en/jmol_plugin DokuWiki plugin] allows to display Jmol applets with files from the 'pdb' namespace.
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| − | Once the wiki is properly configured, the code for inserting Jmol looks like this:
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| − | <nowiki><jmol (filename) (width) (height) (button)>
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| − | ... Jmol scripts ...
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| − | </jmol></nowiki>
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| − | It is possible to put a button so the model is loaded later, as well as to use <tt>Jmol.js</tt> functions.
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| − | | |
| − | === Jmol in MediaWiki ===
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| − | A fully functional JmolProcessor has been written for MediaWiki. Check the [[MediaWiki]] page.
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| − | It has been installed on this Wiki.
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| − | | |
| − | === Jmol in MoinMoin ===
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| − | Now we have a small JmolProcessor for MoinMoin, which works similar the JmolProcessor for MoniWiki.
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| − | # open a source-code section with three curly braces <tt>(<nowiki>{{{</nowiki>)</tt> followed by <tt>#!Jmol</tt> (note the capital J).
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| − | # this and all following lines beginning with a "#" character may include the following options:
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| − | :: <tt>height="pixel", width="pixel", frank="on|off", script="JmolScript"</tt>
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| − | :: other options are not supported
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| − | # insert the source-code of the molecule
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| − | # close the section with three curly braces (<tt>}}}</tt>)
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| − | Example:
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| − | { { {#!Jmol frank='on'
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| − | # height="150" width="150"
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| − | # script='cpk 0.3; wireframe 0.1'
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| − | ATOM 1 O UNK 1 0.000 0.000 0.000 1.00 0.00
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| − | ATOM 2 H UNK 1 0.943 0.000 0.000 1.00 0.00
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| − | ATOM 3 H UNK 1 -0.259 0.907 0.000 1.00 0.00
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| − | ATOM 4 O UNK 1 3.000 0.000 0.000 1.00 0.00
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| − | ATOM 5 H UNK 1 3.568 0.000 0.753 1.00 0.00
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| − | ATOM 6 H UNK 1 3.568 0.000 -0.753 1.00 0.00
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| − | END
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| − | } } }
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| − | A separate mechanism for MoinMoin is described in [[MoinMoin Macros]].
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| − | | |
| − | === Jmol in MoniWiki ===
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| − | A processor has been written for MoniWiki (MoniWiki is a PHP clone of the MoinMoin) to embed the JmolPlugin. It use the Processor feature of MoinMoin.
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| − | A demo is online: http://chemie.skku.ac.kr/wiki/wiki.php/JmolPlugin
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| − | Note that the [[Jmol Applet]] is slightly modified to enable Clipboard feature. You can grab a image with a 'Y' key on the applet : type 'y' on the applet and type 'D' to toggle the rendering method. --WkPark
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| − | The code that can be embedded in Wiki pages in MoniWiki looks like:
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| − | #!jmol (-)
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| − | ATOM 1 O UNK 1 0.000 0.000 0.000 1.00 0.00
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| − | ATOM 2 H UNK 1 0.943 0.000 0.000 1.00 0.00
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| − | ATOM 3 H UNK 1 -0.259 0.907 0.000 1.00 0.00
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| − | ATOM 4 O UNK 1 3.000 0.000 0.000 1.00 0.00
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| − | ATOM 5 H UNK 1 3.568 0.000 0.753 1.00 0.00
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| − | ATOM 6 H UNK 1 3.568 0.000 -0.753 1.00 0.00
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| − | END
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| − | === Jmol in UniWakka ===
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| − | A processor has been written for [http://uniwakka.sourceforge.net/ UniWakka], a PHP-powered wiki, to embed the Jmol applet. It uses a customised actions/ feature of [http://uniwakka.sourceforge.net/ UniWakka] and accesses data files (.mol, .pdb, whatever) stored within the [http://uniwakka.sourceforge.net/ UniWakka] database. The demo is known to work on Mac OSX (Safari, FireFox, Camino, Explorer) and Windoze (Explorer, Opera, FireFox)
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| − | A demo is online: http://www.shef.ac.uk/chemistry/uniwakka/
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| − | See also [http://moinmoin.wikiwikiweb.de/HelpOnParsers Help On Parsers].
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