Jmol JavaScript Object/JME
Integration of JME into Jmol-JSO
The JME applet (Java Molecular Editor by Peter Ertl) allows the user to draw a molecular structure in 2D. Jmol-JSO includes the capability to pass information back and forth between JME and Jmol in a seamless manner. The "information panel" that Jmol-JSO implements can be set up to hold the JME applet, allowing tight integration. Alternatively, the JME applet and the Jmol applet can be set side-by-side on a web page, and applet-applet communication can be handled by the page developer.
Creating and inserting the JME applet
To create a JME applet, use Jmol.getJMEApplet().
Syntax:
Jmol.getJMEApplet = function(id, Info, linkedJmolApplet)
linkedJmolApplet can be set to a Jmol JavaScript Object that will contain this JME drawing panel as a 2D input option in its info panel.
JME-specific methods
All these functions must be applied to the unique Jmol object (this name is literal, cannot be changed) --see syntax and examples below.
Syntax:
Jmol.jmeGetFile = function(jme, asJME) Jmol.jmeOptions = function(jme, options) Jmol.jmeReadMolecule = function(jme, jmeOrMolData) Jmol.jmeReset = function(jme) Jmol.jmeSmiles = function(jme, withStereoChemistry)
