Jmol MediaWiki Extension/Examples

This page demonstrates the use of the Jmol Mediawiki Extension.

Jmol._Canvas2D (Jmol) "JSmol_JmolWiki"[x] loadScript /extensions/Jmol/j2s/core/package.js loadScript /extensions/Jmol/j2s/core/corejmol.z.js loadScript /extensions/Jmol/j2s/J/translation/PO.js loadScript /extensions/Jmol/j2s/core/corescript.z.js JSmol exec JSmol_JmolWiki start applet null Jmol JavaScript applet JSmol_JmolWiki__5522827938692__ initializing Jmol getValue debug null Jmol getValue logLevel null Jmol getValue allowjavascript null AppletRegistry.checkIn(JSmol_JmolWiki__5522827938692__) vwrOptions: { "name":"JSmol_JmolWiki","applet":true,"documentBase":"http://wiki.jmol.org/index.php?oldid=2129&printable=yes&title=Jmol_MediaWiki_Extension%2FExamples","platform":"J.awtjs2d.Platform","fullName":"JSmol_JmolWiki__5522827938692__","codePath":"http:/extensions/Jmol/j2s/","display":"JSmol_JmolWiki_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"5522827938692","bgcolor":"gray" } setting document base to "http://wiki.jmol.org/index.php?oldid=2129&printable=yes&title=Jmol_MediaWiki_Extension%2FExamples" (C) 2015 Jmol Development Jmol Version: 14.29.32 2019-01-29 14:30 java.vendor: Java2Script (HTML5) java.version: 2018-01-28 23:38:52 (JSmol/j2s) os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com) Access: ALL memory: 0.0/0.0 processors available: 1 useCommandThread: false appletId:JSmol_JmolWiki (signed) Jmol getValue emulate null defaults = "Jmol" Jmol getValue boxbgcolor null Jmol getValue bgcolor gray backgroundColor = "gray" Jmol getValue ANIMFRAMECallback null Jmol getValue APPLETREADYCallback Jmol._readyCallback APPLETREADYCallback = "Jmol._readyCallback" callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY Jmol getValue ATOMMOVEDCallback null Jmol getValue AUDIOCallback null Jmol getValue CLICKCallback null Jmol getValue DRAGDROPCallback null Jmol getValue ECHOCallback null Jmol getValue ERRORCallback null Jmol getValue EVALCallback null Jmol getValue HOVERCallback null Jmol getValue IMAGECallback null Jmol getValue LOADSTRUCTCallback null Jmol getValue MEASURECallback null Jmol getValue MESSAGECallback null Jmol getValue MINIMIZATIONCallback null Jmol getValue SERVICECallback null Jmol getValue PICKCallback null Jmol getValue RESIZECallback null Jmol getValue SCRIPTCallback null Jmol getValue SYNCCallback null Jmol getValue STRUCTUREMODIFIEDCallback null Jmol getValue doTranslate null language=en_US Jmol getValue popupMenu null Jmol getValue script null Jmol getValue loadInline null Jmol getValue load null Jmol applet JSmol_JmolWiki__5522827938692__ ready script 1 started pdbGetHeader = true loadScript /extensions/Jmol/j2s/core/coretext.z.js Loading...|Please wait. platformSpeed = 5 loadScript /extensions/Jmol/j2s/core/corescriptcmd.z.js The Resolver thinks FoldingXyz loadScript /extensions/Jmol/j2s/J/adapter/readers/simple/FoldingXyzReader.js Protein p729_gsgs_md reading 215 atoms ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false 1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them. Default Van der Waals type for model set to Babel 215 atoms created ModelSet: not autobonding; use forceAutobond=true to force automatic bond creation Time for creating model: 10 ms loadScript /extensions/Jmol/j2s/JV/DataManager.js loadScript /extensions/Jmol/j2s/J/api/JmolDataManager.js Protein p729_gsgs_md      Script completed Jmol script terminated

Contributors

NicolasVervelle, AngelHerraez