Jmol MediaWiki Extension/Examples

This page demonstrates a simple use of the Jmol Mediawiki Extension.

Ethanol

Jmol._Canvas2D (Jmol) "JSmol_1"[x] loadScript /extensions/Jmol/j2s/core/package.js loadScript /extensions/Jmol/j2s/core/corejmol.z.js loadScript /extensions/Jmol/j2s/J/translation/PO.js loadScript /extensions/Jmol/j2s/core/corescript.z.js JSmol exec JSmol_1 start applet null Jmol JavaScript applet JSmol_1__6283685286104284__ initializing Jmol getValue debug null Jmol getValue logLevel null Jmol getValue allowjavascript null AppletRegistry.checkIn(JSmol_1__6283685286104284__) vwrOptions: { "name":"JSmol_1","applet":true,"documentBase":"http://wiki.jmol.org/index.php?oldid=4998&title=Jmol_MediaWiki_Extension%2FExamples","platform":"J.awtjs2d.Platform","fullName":"JSmol_1__6283685286104284__","codePath":"http:/extensions/Jmol/j2s/","display":"JSmol_1_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"6283685286104284","bgcolor":"gray" } setting document base to "http://wiki.jmol.org/index.php?oldid=4998&title=Jmol_MediaWiki_Extension%2FExamples" (C) 2015 Jmol Development Jmol Version: 14.29.32 2019-01-29 14:30 java.vendor: Java2Script (HTML5) java.version: 2018-01-28 23:38:52 (JSmol/j2s) os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com) Access: ALL memory: 0.0/0.0 processors available: 1 useCommandThread: false appletId:JSmol_1 (signed) Jmol getValue emulate null defaults = "Jmol" Jmol getValue boxbgcolor null Jmol getValue bgcolor gray backgroundColor = "gray" Jmol getValue ANIMFRAMECallback null Jmol getValue APPLETREADYCallback Jmol._readyCallback APPLETREADYCallback = "Jmol._readyCallback" callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY Jmol getValue ATOMMOVEDCallback null Jmol getValue AUDIOCallback null Jmol getValue CLICKCallback null Jmol getValue DRAGDROPCallback null Jmol getValue ECHOCallback null Jmol getValue ERRORCallback null Jmol getValue EVALCallback null Jmol getValue HOVERCallback null Jmol getValue IMAGECallback null Jmol getValue LOADSTRUCTCallback null Jmol getValue MEASURECallback null Jmol getValue MESSAGECallback null Jmol getValue MINIMIZATIONCallback null Jmol getValue SERVICECallback null Jmol getValue PICKCallback null Jmol getValue RESIZECallback null Jmol getValue SCRIPTCallback null Jmol getValue SYNCCallback null Jmol getValue STRUCTUREMODIFIEDCallback null Jmol getValue doTranslate null language=en_US Jmol getValue popupMenu null Jmol getValue script null Jmol getValue loadInline null Jmol getValue load null Jmol applet JSmol_1__6283685286104284__ ready script 1 started pdbGetHeader = true loadScript /extensions/Jmol/j2s/core/coretext.z.js Loading...|Please wait. platformSpeed = 5      FileManager.getAtomSetCollectionFromFile(http://wiki.jmol.org/images/f/f7/Ethanol.xyz) FileManager opening url http://wiki.jmol.org/images/f/f7/Ethanol.xyz The Resolver thinks Xyz This geometry optimized by G92; MP2/6-31G* Time for openFile(http://wiki.jmol.org/images/f/f7/Ethanol.xyz): 164 ms reading 9 atoms ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false 1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them. Default Van der Waals type for model set to Babel 9 atoms created ModelSet: autobonding; use autobond=false to not generate bonds automatically Time for creating model: 9 ms This geometry optimized by G92; MP2/6-31G*      Script completed Jmol script terminated

Start spinningStop spinning

---

Contributors

NicolasVervelle, AngelHerraez