Difference between revisions of "AtomSets/Carbohydrate"

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(carbohydrate atom set)
 
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== 'carbohydrate' atom set ==
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= 'carbohydrate' atom set =
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== Alphabetic ==
  
 
[A2G] = N-acetyl-alpha-D-galactosamine = GalNAc = 2-(acetylamino)-2-deoxy-alpha-D-galactopyranose  (see also NGA)
 
[A2G] = N-acetyl-alpha-D-galactosamine = GalNAc = 2-(acetylamino)-2-deoxy-alpha-D-galactopyranose  (see also NGA)
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[XYS] = alpha-D-xylopyranose
 
[XYS] = alpha-D-xylopyranose
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== Cathegorized ==
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=== Monosaccharides ===
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 +
=== Disaccharides ===
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[CBI] = cellobiose = [&beta;-D-Glc<sub>p</sub>(1->4)]<sub>2</sub>
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[MAB] = mannobiose = [&beta;-D-Man<sub>p</sub>(1->4)]<sub>2</sub>
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[MAL] = maltose = [&alpha;-D-Glc<sub>p</sub>(1->4)]<sub>2</sub>
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 +
[SUC] = sucrose = &beta;-D-Fru<sub>f</sub>(2->1)&alpha;-D-Glc<sub>p</sub>
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[TRE] = trehalose = &alpha;-D-Glc<sub>p</sub>(1->1)&alpha;-D-Glc<sub>p</sub>
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 +
=== Trisaccharides ===
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[CT3] = beta-cellotriose = [&beta;-D-Glc<sub>p</sub>(1->4)]<sub>3</sub>
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[CTR] = cellotriose = [&beta;-D-Glc<sub>p</sub>(1->4)]<sub>2</sub>&alpha;-D-Glc<sub>p</sub>
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[MLR] = maltotriose = [&alpha;-D-Glc<sub>p</sub>(1->4)]<sub>3</sub>
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=== Tetrasaccharides ===
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[CTT] = cellotetraose = [&beta;-D-Glc<sub>p</sub>(1->4)]<sub>4</sub>
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[MTT] = maltotetraose = [&alpha;-D-Glc<sub>p</sub>(1->4)]<sub>4</sub>

Revision as of 18:54, 29 June 2011

'carbohydrate' atom set

Alphabetic

[A2G] = N-acetyl-alpha-D-galactosamine = GalNAc = 2-(acetylamino)-2-deoxy-alpha-D-galactopyranose (see also NGA)

[AFL] = <fucose> obsolete, replaced with FUL

[AGC] = <glucose> obsolete, replaced with GLC

[AHR] = alpha-L-arabinofuranose

[ARA] = alpha-L-arabinopyranose

[ARB] = beta-L-arabinopyranose

[BDF] = beta-D-fructopyranose (see also FRU)

[BDR] = beta-D-ribofuranose

[BGC] = beta-D-glucopyranose (see also GLC)

[BMA] = beta-D-mannopyranose (see also MAN)

[CBI] = cellobiose

[CT3] = beta-cellotriose

[CTR] = cellotriose

[CTT] = cellotetraose

[FCA] = alpha-D-fucose (see also FCB, FUC, FUL)

[FCB] = beta-D-fucose (see also FCA, FUC, FUL)

[FRU] = beta-D-fructofuranose (see also BDF)

[FUC] = alpha-L-fucose (see also FCA, FCB, FUL)

[FUL] = beta-L-fucose (see also FCA, FCB, FUC)

[GAL] = beta-D-galactopyranose (see also GLA)

[GCU] = alpha-D-glucopyranuronic acid (glucuronic acid)

[GLA] = alpha-D-galactopyranose (see also GAL)

[GLB] = <galactose> obsolete, replaced with GAL

[GLC] = alpha-D-glucopyranose (see also BGC)

[GUP] = alpha-L-gulopyranose

[LAT] = beta-lactose

[LXC] = beta-L-xylopyranose

[MAB] = mannobiose

[MAL] = maltose

[MAN] = alpha-D-mannopyranose (see also BMA)

[MLR] = maltotriose

[MTL] = D-mannitol

[MTT] = maltotetraose

[NAG] = N-acetylglucosamine = GlcNAc = 2-(acetylamino)-2-deoxy-beta-D-glucopyranose)

[NAN] = <sialic> obsolete, replaced with SIA

[NGA] = N-acetyl-beta-D-galactosamine = GalNAc = 2-(acetylamino)-2-deoxy-beta-D-galactopyranose (see also A2G)

[RAA] = <rhamnose> obsolete, replaced with RAM

[RAM] = alpha-L-rhamnose

[RHA] = 6-deoxy-mannose-1'-phosphate

[RIB] = alpha-D-ribofuranose

[RIP] = beta-D-ribopyranose

[SIA] = 5-N-acetyl-alpha-D-neuraminic acid (see also SLB)

[SLB] = 5-N-acetyl-beta-D-neuraminic acid (see also SIA)

[SOR] = D-glucitol = D-sorbitol

[SUC] = sucrose

[TRE] = trehalose

[XYL] = D-xylitol

[XYP] = beta-D-xylopyranose

[XYS] = alpha-D-xylopyranose

Cathegorized

Monosaccharides

Disaccharides

[CBI] = cellobiose = [β-D-Glcp(1->4)]2

[MAB] = mannobiose = [β-D-Manp(1->4)]2

[MAL] = maltose = [α-D-Glcp(1->4)]2

[SUC] = sucrose = β-D-Fruf(2->1)α-D-Glcp

[TRE] = trehalose = α-D-Glcp(1->1)α-D-Glcp

Trisaccharides

[CT3] = beta-cellotriose = [β-D-Glcp(1->4)]3

[CTR] = cellotriose = [β-D-Glcp(1->4)]2α-D-Glcp

[MLR] = maltotriose = [α-D-Glcp(1->4)]3

Tetrasaccharides

[CTT] = cellotetraose = [β-D-Glcp(1->4)]4

[MTT] = maltotetraose = [α-D-Glcp(1->4)]4

Contributors

AngelHerraez