Difference between revisions of "Inlined CML File"

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(Inlined CML File)
m (add to Category)
 
(3 intermediate revisions by one other user not shown)
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<size>150</size>
 
<size>150</size>
 
<color>red</color>
 
<color>red</color>
     <inlineContents><cml:molecule xmlns:cml="http://www.xml-cml.org/schema/cml2/core"
+
     <inlineContents><![CDATA[<cml:molecule xmlns:cml="http://www.xml-cml.org/schema/cml2/core" title="chair.mol">
title="chair.mol">
 
 
<cml:metadataList title="generated automatically from Openbabel">
 
<cml:metadataList title="generated automatically from Openbabel">
 
<cml:metadata name="dc:creator" content="OpenBabel version 1-100.1"/>
 
<cml:metadata name="dc:creator" content="OpenBabel version 1-100.1"/>
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<cml:atomArray atomID="a1 a2 a3 a4 a5 a6 a7 a8 a9 a10 a11 a12 a13 a14 a15 a16 a17 a18" elementType="C C C C C C H H H H H H H H H H H H" formalCharge="0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0" x3="1.688100 2.148400 2.936100 2.092700 1.632900 0.853200 2.580700 1.089700 1.257800 2.779100 3.872500 3.241300 1.200500 2.683500 0.995700 2.524000 0.564200 -0.091900" y3="2.157200 3.621700 3.912600 3.576900 2.112000 1.810200 1.488700 1.971100 4.292700 3.847400 3.305300 4.986100 4.246700 3.770000 1.892800 1.442600 0.732200 2.403900" z3="-3.019300 -2.979700 -1.694200 -0.455700 -0.489800 -1.777800 -3.065200 -3.943000 -3.028200 -3.872700 -1.684400 -1.668500 -0.422400 0.471400 0.400200 -0.429400 -1.803100 -1.787800"/>
 
<cml:atomArray atomID="a1 a2 a3 a4 a5 a6 a7 a8 a9 a10 a11 a12 a13 a14 a15 a16 a17 a18" elementType="C C C C C C H H H H H H H H H H H H" formalCharge="0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0" x3="1.688100 2.148400 2.936100 2.092700 1.632900 0.853200 2.580700 1.089700 1.257800 2.779100 3.872500 3.241300 1.200500 2.683500 0.995700 2.524000 0.564200 -0.091900" y3="2.157200 3.621700 3.912600 3.576900 2.112000 1.810200 1.488700 1.971100 4.292700 3.847400 3.305300 4.986100 4.246700 3.770000 1.892800 1.442600 0.732200 2.403900" z3="-3.019300 -2.979700 -1.694200 -0.455700 -0.489800 -1.777800 -3.065200 -3.943000 -3.028200 -3.872700 -1.684400 -1.668500 -0.422400 0.471400 0.400200 -0.429400 -1.803100 -1.787800"/>
 
<cml:bondArray atomRef1="a1 a1 a1 a1 a2 a2 a2 a3 a3 a3 a4 a4 a4 a5 a5 a5 a6 a6" atomRef2="a2 a6 a7 a8 a3 a9 a10 a4 a11 a12 a5 a13 a14 a6 a15 a16 a17 a18" order="1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1"/>
 
<cml:bondArray atomRef1="a1 a1 a1 a1 a2 a2 a2 a3 a3 a3 a4 a4 a4 a5 a5 a5 a6 a6" atomRef2="a2 a6 a7 a8 a3 a9 a10 a4 a11 a12 a5 a13 a14 a6 a15 a16 a17 a18" order="1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1"/>
</cml:molecule>
+
</cml:molecule>]]>
 
</inlineContents>
 
</inlineContents>
 
   </jmolApplet>
 
   </jmolApplet>
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<size>150</size>
 
<size>150</size>
 
<color>orange</color>
 
<color>orange</color>
     <inlineContents>&lt;cml:molecule xmlns:cml="http://www.xml-cml.org/schema/cml2/core"
+
     <inlineContents><![CDATA[&lt;cml:molecule xmlns:cml="http://www.xml-cml.org/schema/cml2/core" title="chair.mol"&gt;
title="chair.mol"&gt;
 
 
&lt;cml:metadataList title="generated automatically from Openbabel"&gt;
 
&lt;cml:metadataList title="generated automatically from Openbabel"&gt;
 
&lt;cml:metadata name="dc:creator" content="OpenBabel version 1-100.1"/&gt;
 
&lt;cml:metadata name="dc:creator" content="OpenBabel version 1-100.1"/&gt;
Line 50: Line 48:
 
&lt;cml:atomArray atomID="a1 a2 a3 a4 a5 a6 a7 a8 a9 a10 a11 a12 a13 a14 a15 a16 a17 a18" elementType="C C C C C C H H H H H H H H H H H H" formalCharge="0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0" x3="1.688100 2.148400 2.936100 2.092700 1.632900 0.853200 2.580700 1.089700 1.257800 2.779100 3.872500 3.241300 1.200500 2.683500 0.995700 2.524000 0.564200 -0.091900" y3="2.157200 3.621700 3.912600 3.576900 2.112000 1.810200 1.488700 1.971100 4.292700 3.847400 3.305300 4.986100 4.246700 3.770000 1.892800 1.442600 0.732200 2.403900" z3="-3.019300 -2.979700 -1.694200 -0.455700 -0.489800 -1.777800 -3.065200 -3.943000 -3.028200 -3.872700 -1.684400 -1.668500 -0.422400 0.471400 0.400200 -0.429400 -1.803100 -1.787800"/&gt;
 
&lt;cml:atomArray atomID="a1 a2 a3 a4 a5 a6 a7 a8 a9 a10 a11 a12 a13 a14 a15 a16 a17 a18" elementType="C C C C C C H H H H H H H H H H H H" formalCharge="0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0" x3="1.688100 2.148400 2.936100 2.092700 1.632900 0.853200 2.580700 1.089700 1.257800 2.779100 3.872500 3.241300 1.200500 2.683500 0.995700 2.524000 0.564200 -0.091900" y3="2.157200 3.621700 3.912600 3.576900 2.112000 1.810200 1.488700 1.971100 4.292700 3.847400 3.305300 4.986100 4.246700 3.770000 1.892800 1.442600 0.732200 2.403900" z3="-3.019300 -2.979700 -1.694200 -0.455700 -0.489800 -1.777800 -3.065200 -3.943000 -3.028200 -3.872700 -1.684400 -1.668500 -0.422400 0.471400 0.400200 -0.429400 -1.803100 -1.787800"/&gt;
 
&lt;cml:bondArray atomRef1="a1 a1 a1 a1 a2 a2 a2 a3 a3 a3 a4 a4 a4 a5 a5 a5 a6 a6" atomRef2="a2 a6 a7 a8 a3 a9 a10 a4 a11 a12 a5 a13 a14 a6 a15 a16 a17 a18" order="1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1"/&gt;
 
&lt;cml:bondArray atomRef1="a1 a1 a1 a1 a2 a2 a2 a3 a3 a3 a4 a4 a4 a5 a5 a5 a6 a6" atomRef2="a2 a6 a7 a8 a3 a9 a10 a4 a11 a12 a5 a13 a14 a6 a15 a16 a17 a18" order="1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1"/&gt;
&lt;/cml:molecule&gt;
+
&lt;/cml:molecule&gt;]]>
 
</inlineContents>
 
</inlineContents>
 
   </jmolApplet>
 
   </jmolApplet>
 
</jmol>
 
</jmol>
  
Neither of these examples currently displays.
+
Both of these examples display if (and only if) the CML contents is put inside <code>&lt;![CDATA[</code> and <code>]]&gt;</code> tags.
 +
 
 +
[[Category:Pages Using Jmol MW Extension]]

Latest revision as of 20:39, 23 November 2010

Inlined CML File

This inline example is of a datafile in XML format, but fully carried in a declared namespace of xmlns:cml="http://www.xml-cml.org/schema/cml2/core. In theory, this XML should be processable separately from e.g. the jmol default namespace. Does Mediawiki honour such namespaces?

The next example is the same datafile, but fully escaped.

Both of these examples display if (and only if) the CML contents is put inside <![CDATA[ and ]]> tags.