Jmol JavaScript Object/JSV
Integration of JSpecView into Jmol-JSO
Extensive work in 2012 integrated JSpecView into Jmol 13. The full Jmol application includes a new "tools" menu item that opens a frame for JSpecView. For the applet, Jmol and JSpecView are two distinct applets that talk to each other using the Jmol sync command. Jmol-JSO brokers this transaction and allows coordinated applet start-up so that one applet does not send a command to the other before both are ready.
Associated with this integration, we have designed a specification for an extension of the JCAMP-DX format that allows one JDX file to contain Jmol-readable models and peak information, allowing the user to click on, for example, a carbon atom in Jmol and have the C-13 NMR spectrum automatically display and highlight the associated peak in JSpecView.
For a demonstration of the Jmol/JSpecView connection, see the JSpecView subdirectory at chemapps.stolaf.edu or the demo pages at the University of the West Indies.
JSpecView-Specific Functions
All these functions must be applied to the unique Jmol object (this name is literal, cannot be changed) --see syntax and examples below.
Syntax:
Jmol.jsvAddHightlight = function(jsvApplet, x1, x2, r, g, b, a) Jmol.jsvExport = function(jsvApplet, exportType, n) Jmol.jsvGetCoordinate = function(jsvApplet) Jmol.jsvGetPropertyAsJavaObject = function(jsvApplet, key) Jmol.jsvGetPropertyAsJSON = function(jsvApplet, key) Jmol.jsvGetSolnColour = function(jsvApplet) Jmol.jsvIsPro = function(jsvApplet) Jmol.jsvIsSigned = function(jsvApplet) Jmol.jsvLoadInline = function(jsvApplet, data, params) Jmol.jsvRemoveAllHighlights = function(jsvApplet) Jmol.jsvRemoveHighlight = function(jsvApplet, x1, x2) Jmol.jsvReversePlot = function(jsvApplet) Jmol.jsvRunScript = function(jsvApplet, script) Jmol.jsvRunScriptNow = function(jsvApplet, script) Jmol.jsvSetFilePath = function(jsvApplet, tmpFilePath) Jmol.jsvSetSpectrumNumber = function(jsvApplet, n) Jmol.jsvSetVisible = function(jsvApplet, TF) Jmol.jsvSyncScript = function(jsvApplet, peakScript) Jmol.jsvToggleCoordinate = function(jsvApplet) Jmol.jsvToggleGrid = function(jsvApplet) Jmol.jsvToggleIntegration = function(jsvApplet) Jmol.jsvWriteStatus = function(jsvApplet, msg)
