Difference between revisions of "Jmol MediaWiki Extension/Examples"

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This page demonstrates the use of the Jmol Mediawiki Extension.
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This page demonstrates a simple use of the [[MediaWiki|Jmol Mediawiki Extension]].
  
<center><jmol><jmolApplet><name>JmolWiki</name><color>gray</color><onlineContents>
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<center><jmol>
215 p729_gsgs_md
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<jmolApplet>
1 N 23.228223 5.654658 29.115329 2 213 214 215
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<title>Ethanol</title><color>gray</color>
2 HT1 23.823481 6.503227 29.200187 1
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<uploadedFileContents>Ethanol.xyz</uploadedFileContents>
3 C 19.245783 -6.401303 27.509863 4 5 10
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</jmolApplet>
4 OT2 19.498501 -6.555715 28.703682 3
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<jmolMenu>
5 OT1 18.953258 -7.363219 26.801302 3
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<item><text>Start spinning</text><script>spin on</script></item>
6 OG1 20.426128 -3.260700 27.428269 7 8
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<item><text>Stop spinning</text><script>spin off</script></item>
7 HG1 20.967400 -2.595135 26.997395 6
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<menuHeight>-1</menuHeight>
8 CB 19.992623 -4.204704 26.460109 9 6 10
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</jmolMenu>
9 CG2 19.543694 -3.412632 25.242944 8
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<jmolButton>
10 CA 18.816779 -5.062813 26.931226 3 8 11
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    <script>console</script>
11 N 17.879385 -4.346771 27.774501 10 12 13
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    <text>open a console window</text>
12 H 18.305610 -3.940411 28.557847 11
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</jmolButton>
13 C 16.604300 -4.405452 27.400773 11 14 24
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</jmol></center>
14 O 16.282181 -4.898720 26.321020 13
 
15 OH 16.762997 -8.932446 31.593220 16 17
 
16 HH 17.279707 -9.534497 31.052694 15
 
17 CZ 16.106888 -7.989850 30.828021 15 18 20
 
18 CE2 15.873219 -8.168663 29.479711 17 19
 
19 CD2 15.186324 -7.191725 28.788159 18 22
 
20 CE1 15.678475 -6.811911 31.405458 17 21
 
21 CD1 15.113502 -5.751907 30.725987 20 22
 
22 CG 14.858934 -5.994515 29.391506 19 21 23
 
23 CB 14.409533 -4.804125 28.559926 22 24
 
24 CA 15.552034 -3.827539 28.333108 13 23 25
 
25 N 14.946280 -2.655763 27.730956 24 26 27
 
26 H 14.041140 -2.760839 27.370224 25
 
27 C 15.490679 -1.449302 27.600207 25 28 33
 
28 O 16.658118 -1.308827 27.961245 27
 
29 CG1 16.201445 -0.341858 24.693859 30 31
 
30 CD 16.618104 -1.184804 23.474247 29
 
31 CB 14.825517 -0.638224 25.267823 29 32 33
 
32 CG2 13.782337 0.176412 24.520442 31
 
33 CA 14.705551 -0.438643 26.780031 27 31 34
 
34 N 14.948556 0.949407 27.121890 33 35 36
 
35 H 15.453194 1.519563 26.504872 34
 
36 C 14.367898 1.483392 28.192732 34 37 46
 
37 O 13.426751 0.875181 28.699975 36
 
38 NZ 13.067338 1.553658 33.285370 39 40 41 42
 
39 HZ3 12.769083 1.594811 32.289903 38
 
40 HZ2 13.803115 0.831013 33.419638 38
 
41 HZ1 12.218248 1.337526 33.845665 38
 
42 CE 13.374395 2.964526 33.418283 38 43
 
43 CD 14.512751 3.292014 32.465763 42 44
 
44 CG 13.990878 3.241056 31.039066 43 45
 
45 CB 15.071461 3.154193 29.973598 44 46
 
46 CA 14.727497 2.925637 28.510752 36 45 47
 
47 N 13.574281 3.697481 28.090110 46 48 49
 
48 H 12.763890 3.298286 28.470061 47
 
49 C 13.598843 4.720348 27.240300 47 50 55
 
50 O 14.727237 5.003838 26.841125 49
 
51 OG1 11.118355 5.976810 25.059249 52 53
 
52 HG1 10.712451 5.764577 24.215565 51
 
53 CB 11.899562 4.877439 25.503693 54 51 55
 
54 CG2 11.223924 3.522078 25.633936 53
 
55 CA 12.474891 5.602691 26.721883 49 53 56
 
56 N 12.983547 6.940650 26.490026 55 57 58
 
57 H 12.952526 7.266603 25.566308 56
 
58 C 13.228050 7.808211 27.468081 56 59 63
 
59 O 12.942547 7.538487 28.633726 58
 
60 OG 13.192097 11.390059 26.355369 61 62
 
61 HG 13.979187 11.683110 26.820362 60
 
62 CB 12.683692 10.199982 26.939881 60 63
 
63 CA 13.793505 9.182529 27.148609 58 62 64
 
64 N 14.542396 9.127844 25.908148 63 65 66
 
65 H 14.018258 9.240528 25.087776 64
 
66 C 15.872071 9.157667 25.914841 64 67 68
 
67 O 16.427840 9.265085 27.006867 66
 
68 CA 16.771169 9.032171 24.695685 66 69
 
69 N 17.462946 7.757820 24.690897 68 70 71
 
70 H 18.367807 7.809848 25.063663 69
 
71 C 16.865790 6.612214 24.374709 69 72 79
 
72 O 15.746350 6.642111 23.865855 71
 
73 ND2 15.084922 3.269751 23.214381 74 75 76
 
74 HD22 14.370297 2.630281 23.416343 73
 
75 HD21 15.056584 3.858787 22.431664 73
 
76 CG 16.154022 3.350442 24.001448 73 77 78
 
77 OD1 16.167835 2.715538 25.054848 76
 
78 CB 17.337083 4.217072 23.601711 76 79
 
79 CA 17.701241 5.353569 24.543111 71 78 80
 
80 N 17.635955 4.834116 25.895329 79 81 82
 
81 H 16.803280 4.421640 26.206698 80
 
82 C 18.602430 5.096395 26.770604 80 83 91
 
83 O 19.525272 5.835341 26.431088 82
 
84 NE2 15.618290 6.595560 28.999028 85 86 87
 
85 HE22 14.824076 6.732081 29.556687 84
 
86 HE21 15.616579 6.324974 28.057120 84
 
87 CD 16.687268 6.905189 29.727278 84 88 89
 
88 OE1 16.617962 7.089211 30.941467 87
 
89 CG 18.081448 6.984249 29.126899 87 90
 
90 CB 18.799475 5.650356 29.251723 89 91
 
91 CA 18.438689 4.611908 28.202012 82 90 92
 
92 N 19.162210 3.378484 28.442290 91 93 94
 
93 H 20.049570 3.370449 28.858166 92
 
94 C 18.651296 2.233739 27.997930 92 95 105
 
95 O 17.517501 2.012916 27.575226 94
 
96 OH 22.959061 3.241555 23.452513 97 98
 
97 HH 23.874688 3.171953 23.732517 96
 
98 CZ 22.256293 2.555718 24.422152 96 99 101
 
99 CE2 22.729692 2.370529 25.705147 98 100
 
100 CD2 21.970739 1.601684 26.563811 99 103
 
101 CE1 21.040311 2.028582 24.037490 98 102
 
102 CD1 20.315444 1.180658 24.849920 101 103
 
103 CG 20.782766 1.041055 26.140878 100 102 104
 
104 CB 20.016489 0.250870 27.189155 103 105
 
105 CA 19.584153 1.095073 28.376935 94 104 106
 
106 N 18.871372 0.145276 29.209011 105 107 108
 
107 H 18.582042 -0.754968 28.951612 106
 
108 C 18.741674 0.445924 30.498073 106 109 121
 
109 O 19.318067 1.386264 31.042535 108
 
110 CZ3 12.808691 -1.695926 30.850589 111 116
 
111 CH2 12.175292 -2.195956 31.970057 110 112
 
112 CZ2 12.868119 -2.338015 33.155065 111 117
 
113 NE1 14.680567 -1.454058 34.338777 114 115 117
 
114 HE1 14.325565 -1.733349 35.208488 113
 
115 CD1 15.722926 -0.723200 34.051757 113 119
 
116 CE3 14.117408 -1.262261 30.910890 110 118
 
117 CE2 14.175045 -1.896266 33.190796 112 113 118
 
118 CD2 14.830728 -1.394896 32.084808 116 117 119
 
119 CG 15.811573 -0.626403 32.677994 115 118 120
 
120 CB 16.898078 0.284595 32.130196 119 121
 
121 CA 17.823255 -0.518621 31.230578 108 120 122
 
122 N 18.457896 -1.423927 32.168753 121 123 124
 
123 H 18.587245 -1.079372 33.077030 122
 
124 C 18.588325 -2.724790 31.924496 122 125 134
 
125 O 18.394657 -3.111278 30.772955 124
 
126 NZ 21.473293 -9.190027 33.823190 127 128 129 130
 
127 HZ3 21.591961 -9.820147 34.642007 126
 
128 HZ2 20.586340 -9.449006 33.345871 126
 
129 HZ1 22.260108 -9.447798 33.193839 126
 
130 CE 21.265650 -7.777756 34.077899 126 131
 
131 CD 21.061623 -6.913431 32.844322 130 132
 
132 CG 20.619061 -5.615656 33.500311 131 133
 
133 CB 20.028527 -4.680609 32.457547 132 134
 
134 CA 19.073490 -3.646666 33.031385 124 133 135
 
135 N 17.979375 -4.392553 33.622241 134 136 137
 
136 H 17.649608 -5.183616 33.146951 135
 
137 C 17.347960 -3.994434 34.723058 135 138 143
 
138 O 17.501446 -2.922719 35.306866 137
 
139 OG1 15.078741 -3.496887 36.704333 140 141
 
140 HG1 15.945042 -3.262408 37.045169 139
 
141 CB 14.960467 -4.394766 35.610602 142 139 143
 
142 CG2 13.868726 -5.407539 35.915277 141
 
143 CA 16.346717 -4.971850 35.316920 137 141 144
 
144 N 16.838474 -5.537850 36.558037 143 145 146
 
145 H 16.492329 -5.036252 37.325506 144
 
146 C 17.698492 -6.550815 36.614950 144 147 151
 
147 O 18.214550 -7.073498 35.628331 146
 
148 OG 16.165560 -8.189448 38.659830 149 150
 
149 HG 15.720350 -8.942243 39.055672 148
 
150 CB 17.545687 -8.376408 38.382876 148 151
 
151 CA 18.183364 -7.062505 37.961621 146 150 152
 
152 N 17.926794 -5.993046 38.906589 151 153 154
 
153 H 17.045394 -5.565197 38.884265 152
 
154 C 18.934898 -5.574803 39.666679 152 155 156
 
155 O 20.095420 -5.981969 39.684992 154
 
156 CA 18.459623 -4.391098 40.493360 154 157
 
157 N 18.759004 -3.084673 39.940047 156 158 159
 
158 H 19.447695 -2.558691 40.397716 157
 
159 C 18.294681 -2.650192 38.771901 157 160 167
 
160 O 17.400794 -3.202232 38.132255 159
 
161 ND2 15.355971 -0.323579 38.809144 162 163 164
 
162 HD22 14.696856 -0.214854 39.526191 161
 
163 HD21 14.998453 -0.639354 37.953067 161
 
164 CG 16.657667 -0.068689 38.906860 161 165 166
 
165 OD1 17.110157 0.389891 39.954658 164
 
166 CB 17.747092 -0.329476 37.879450 164 167
 
167 CA 18.825194 -1.285785 38.362770 159 166 168
 
168 N 19.622577 -1.488204 37.168732 167 169 170
 
169 H 19.073188 -1.454590 36.357896 168
 
170 C 20.951385 -1.443561 37.203546 168 171 179
 
171 O 21.572480 -1.150841 38.224075 170
 
172 NE2 26.167858 -2.190602 35.347953 173 174 175
 
173 HE22 27.056978 -2.568232 35.513074 172
 
174 HE21 25.975409 -1.274889 35.056682 172
 
175 CD 25.203943 -3.106891 35.362439 172 176 177
 
176 OE1 25.439587 -4.286905 35.617316 175
 
177 CG 23.812416 -2.640997 34.966173 175 178
 
178 CB 22.912159 -2.426953 36.172054 177 179
 
179 CA 21.583011 -1.759919 35.857661 170 178 180
 
180 N 21.816516 -0.455431 35.269172 179 181 182
 
181 H 22.641969 0.034109 35.467663 180
 
182 C 20.921509 0.209724 34.544268 180 183 188
 
183 O 19.720225 -0.054577 34.540350 182
 
184 CG1 19.754956 3.191075 33.750021 185 186
 
185 CD 19.241351 4.431189 34.504964 184
 
186 CB 21.082909 2.779299 34.364350 184 187 188
 
187 CG2 22.108538 3.856510 34.051101 186
 
188 CA 21.631615 1.413498 33.946650 182 186 189
 
189 N 21.766498 1.162711 32.524872 188 190 191
 
190 H 20.963869 1.065942 31.970928 189
 
191 C 22.982457 0.983176 32.016768 189 192 204
 
192 O 23.928380 0.487648 32.627199 191
 
193 CZ3 25.515466 -4.058847 29.074099 194 199
 
194 CH2 24.520924 -4.998703 28.895199 193 195
 
195 CZ2 23.207030 -4.805372 29.270351 194 200
 
196 NE1 21.629324 -3.092418 29.803135 197 198 200
 
197 HE1 20.714669 -3.437611 29.734674 196
 
198 CD1 21.726749 -1.791600 29.841013 196 202
 
199 CE3 25.138047 -2.825695 29.565339 193 201
 
200 CE2 22.856534 -3.603038 29.850047 195 196 201
 
201 CD2 23.834591 -2.637879 29.977968 199 200 202
 
202 CG 23.070009 -1.489783 29.936008 198 201 203
 
203 CB 23.603771 -0.075134 29.779911 202 204
 
204 CA 22.950714 1.092747 30.501027 191 203 205
 
205 N 23.739502 2.239659 30.094876 204 206 207
 
206 H 24.708965 2.155426 30.211010 205
 
207 C 23.185580 3.441111 29.958260 205 208 213
 
208 O 21.965644 3.560148 30.060940 207
 
209 OG1 24.883478 6.672343 30.691671 210 211
 
210 HG1 25.486567 7.135017 31.278033 209
 
211 CB 24.498761 5.350609 31.040137 212 209 213
 
212 CG2 25.709798 4.719805 31.707885 211
 
213 CA 24.071922 4.657367 29.744699 207 211 1
 
214 HT3 22.279527 5.833192 29.502246 1
 
215 HT2 23.082385 5.419113 28.112900 1
 
</onlineContents></jmolApplet>
 
  
<jmolButton><script>spin on</script><name>JmolWiki</name><text>Start spinning</text></jmolButton><jmolButton><script>spin off</script><name>JmolWiki</name><text>Stop spinning</text></jmolButton></jmol></center>
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<br /><br />
 +
-----
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<br /><br />
 +
 
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<center><jmol><jmolAppletButton><title>Show ethanol in popup window</title><color>gray</color>
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<uploadedFileContents>Ethanol.xyz</uploadedFileContents></jmolAppletButton>
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</jmol></center>
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[[Category:Pages Using Jmol MW Extension]]

Latest revision as of 20:34, 23 November 2010

This page demonstrates a simple use of the Jmol Mediawiki Extension.

Ethanol