Difference between revisions of "Jmol MediaWiki Extension/Examples"

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This page demonstrates the use of the Jmol Mediawiki Extension.
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This page demonstrates a simple use of the [[MediaWiki|Jmol Mediawiki Extension]].
  
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<center><jmol><jmolApplet><script>set spin X 10; spin on</script><name>JmolWiki</name><color>gray</color><contents>
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There are many more examples, with different options, in [[MediaWiki/Extension]]
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215 p729_gsgs_md
 
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1 N 23.228223 5.654658 29.115329 2 213 214 215
 
−
2 HT1 23.823481 6.503227 29.200187 1
 
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3 C 19.245783 -6.401303 27.509863 4 5 10
 
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4 OT2 19.498501 -6.555715 28.703682 3
 
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5 OT1 18.953258 -7.363219 26.801302 3
 
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6 OG1 20.426128 -3.260700 27.428269 7 8
 
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7 HG1 20.967400 -2.595135 26.997395 6
 
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8 CB 19.992623 -4.204704 26.460109 9 6 10
 
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9 CG2 19.543694 -3.412632 25.242944 8
 
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10 CA 18.816779 -5.062813 26.931226 3 8 11
 
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11 N 17.879385 -4.346771 27.774501 10 12 13
 
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12 H 18.305610 -3.940411 28.557847 11
 
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13 C 16.604300 -4.405452 27.400773 11 14 24
 
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14 O 16.282181 -4.898720 26.321020 13
 
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15 OH 16.762997 -8.932446 31.593220 16 17
 
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16 HH 17.279707 -9.534497 31.052694 15
 
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17 CZ 16.106888 -7.989850 30.828021 15 18 20
 
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18 CE2 15.873219 -8.168663 29.479711 17 19
 
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19 CD2 15.186324 -7.191725 28.788159 18 22
 
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20 CE1 15.678475 -6.811911 31.405458 17 21
 
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21 CD1 15.113502 -5.751907 30.725987 20 22
 
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22 CG 14.858934 -5.994515 29.391506 19 21 23
 
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23 CB 14.409533 -4.804125 28.559926 22 24
 
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24 CA 15.552034 -3.827539 28.333108 13 23 25
 
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25 N 14.946280 -2.655763 27.730956 24 26 27
 
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26 H 14.041140 -2.760839 27.370224 25
 
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27 C 15.490679 -1.449302 27.600207 25 28 33
 
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28 O 16.658118 -1.308827 27.961245 27
 
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29 CG1 16.201445 -0.341858 24.693859 30 31
 
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30 CD 16.618104 -1.184804 23.474247 29
 
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31 CB 14.825517 -0.638224 25.267823 29 32 33
 
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32 CG2 13.782337 0.176412 24.520442 31
 
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33 CA 14.705551 -0.438643 26.780031 27 31 34
 
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34 N 14.948556 0.949407 27.121890 33 35 36
 
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35 H 15.453194 1.519563 26.504872 34
 
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36 C 14.367898 1.483392 28.192732 34 37 46
 
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37 O 13.426751 0.875181 28.699975 36
 
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38 NZ 13.067338 1.553658 33.285370 39 40 41 42
 
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39 HZ3 12.769083 1.594811 32.289903 38
 
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40 HZ2 13.803115 0.831013 33.419638 38
 
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41 HZ1 12.218248 1.337526 33.845665 38
 
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42 CE 13.374395 2.964526 33.418283 38 43
 
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43 CD 14.512751 3.292014 32.465763 42 44
 
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44 CG 13.990878 3.241056 31.039066 43 45
 
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45 CB 15.071461 3.154193 29.973598 44 46
 
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46 CA 14.727497 2.925637 28.510752 36 45 47
 
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47 N 13.574281 3.697481 28.090110 46 48 49
 
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48 H 12.763890 3.298286 28.470061 47
 
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49 C 13.598843 4.720348 27.240300 47 50 55
 
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50 O 14.727237 5.003838 26.841125 49
 
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51 OG1 11.118355 5.976810 25.059249 52 53
 
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52 HG1 10.712451 5.764577 24.215565 51
 
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53 CB 11.899562 4.877439 25.503693 54 51 55
 
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54 CG2 11.223924 3.522078 25.633936 53
 
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55 CA 12.474891 5.602691 26.721883 49 53 56
 
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56 N 12.983547 6.940650 26.490026 55 57 58
 
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57 H 12.952526 7.266603 25.566308 56
 
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58 C 13.228050 7.808211 27.468081 56 59 63
 
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59 O 12.942547 7.538487 28.633726 58
 
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60 OG 13.192097 11.390059 26.355369 61 62
 
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61 HG 13.979187 11.683110 26.820362 60
 
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62 CB 12.683692 10.199982 26.939881 60 63
 
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63 CA 13.793505 9.182529 27.148609 58 62 64
 
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64 N 14.542396 9.127844 25.908148 63 65 66
 
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65 H 14.018258 9.240528 25.087776 64
 
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66 C 15.872071 9.157667 25.914841 64 67 68
 
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67 O 16.427840 9.265085 27.006867 66
 
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68 CA 16.771169 9.032171 24.695685 66 69
 
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69 N 17.462946 7.757820 24.690897 68 70 71
 
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70 H 18.367807 7.809848 25.063663 69
 
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71 C 16.865790 6.612214 24.374709 69 72 79
 
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72 O 15.746350 6.642111 23.865855 71
 
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73 ND2 15.084922 3.269751 23.214381 74 75 76
 
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74 HD22 14.370297 2.630281 23.416343 73
 
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75 HD21 15.056584 3.858787 22.431664 73
 
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76 CG 16.154022 3.350442 24.001448 73 77 78
 
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77 OD1 16.167835 2.715538 25.054848 76
 
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78 CB 17.337083 4.217072 23.601711 76 79
 
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79 CA 17.701241 5.353569 24.543111 71 78 80
 
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80 N 17.635955 4.834116 25.895329 79 81 82
 
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81 H 16.803280 4.421640 26.206698 80
 
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82 C 18.602430 5.096395 26.770604 80 83 91
 
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83 O 19.525272 5.835341 26.431088 82
 
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84 NE2 15.618290 6.595560 28.999028 85 86 87
 
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85 HE22 14.824076 6.732081 29.556687 84
 
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86 HE21 15.616579 6.324974 28.057120 84
 
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87 CD 16.687268 6.905189 29.727278 84 88 89
 
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88 OE1 16.617962 7.089211 30.941467 87
 
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89 CG 18.081448 6.984249 29.126899 87 90
 
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90 CB 18.799475 5.650356 29.251723 89 91
 
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91 CA 18.438689 4.611908 28.202012 82 90 92
 
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92 N 19.162210 3.378484 28.442290 91 93 94
 
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93 H 20.049570 3.370449 28.858166 92
 
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94 C 18.651296 2.233739 27.997930 92 95 105
 
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95 O 17.517501 2.012916 27.575226 94
 
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96 OH 22.959061 3.241555 23.452513 97 98
 
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97 HH 23.874688 3.171953 23.732517 96
 
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98 CZ 22.256293 2.555718 24.422152 96 99 101
 
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99 CE2 22.729692 2.370529 25.705147 98 100
 
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100 CD2 21.970739 1.601684 26.563811 99 103
 
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101 CE1 21.040311 2.028582 24.037490 98 102
 
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102 CD1 20.315444 1.180658 24.849920 101 103
 
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103 CG 20.782766 1.041055 26.140878 100 102 104
 
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104 CB 20.016489 0.250870 27.189155 103 105
 
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105 CA 19.584153 1.095073 28.376935 94 104 106
 
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106 N 18.871372 0.145276 29.209011 105 107 108
 
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107 H 18.582042 -0.754968 28.951612 106
 
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108 C 18.741674 0.445924 30.498073 106 109 121
 
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109 O 19.318067 1.386264 31.042535 108
 
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110 CZ3 12.808691 -1.695926 30.850589 111 116
 
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111 CH2 12.175292 -2.195956 31.970057 110 112
 
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112 CZ2 12.868119 -2.338015 33.155065 111 117
 
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113 NE1 14.680567 -1.454058 34.338777 114 115 117
 
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114 HE1 14.325565 -1.733349 35.208488 113
 
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115 CD1 15.722926 -0.723200 34.051757 113 119
 
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116 CE3 14.117408 -1.262261 30.910890 110 118
 
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117 CE2 14.175045 -1.896266 33.190796 112 113 118
 
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118 CD2 14.830728 -1.394896 32.084808 116 117 119
 
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119 CG 15.811573 -0.626403 32.677994 115 118 120
 
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120 CB 16.898078 0.284595 32.130196 119 121
 
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121 CA 17.823255 -0.518621 31.230578 108 120 122
 
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122 N 18.457896 -1.423927 32.168753 121 123 124
 
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123 H 18.587245 -1.079372 33.077030 122
 
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124 C 18.588325 -2.724790 31.924496 122 125 134
 
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125 O 18.394657 -3.111278 30.772955 124
 
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126 NZ 21.473293 -9.190027 33.823190 127 128 129 130
 
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127 HZ3 21.591961 -9.820147 34.642007 126
 
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128 HZ2 20.586340 -9.449006 33.345871 126
 
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129 HZ1 22.260108 -9.447798 33.193839 126
 
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130 CE 21.265650 -7.777756 34.077899 126 131
 
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131 CD 21.061623 -6.913431 32.844322 130 132
 
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132 CG 20.619061 -5.615656 33.500311 131 133
 
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133 CB 20.028527 -4.680609 32.457547 132 134
 
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134 CA 19.073490 -3.646666 33.031385 124 133 135
 
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135 N 17.979375 -4.392553 33.622241 134 136 137
 
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136 H 17.649608 -5.183616 33.146951 135
 
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137 C 17.347960 -3.994434 34.723058 135 138 143
 
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138 O 17.501446 -2.922719 35.306866 137
 
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139 OG1 15.078741 -3.496887 36.704333 140 141
 
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140 HG1 15.945042 -3.262408 37.045169 139
 
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141 CB 14.960467 -4.394766 35.610602 142 139 143
 
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142 CG2 13.868726 -5.407539 35.915277 141
 
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143 CA 16.346717 -4.971850 35.316920 137 141 144
 
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144 N 16.838474 -5.537850 36.558037 143 145 146
 
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145 H 16.492329 -5.036252 37.325506 144
 
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146 C 17.698492 -6.550815 36.614950 144 147 151
 
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147 O 18.214550 -7.073498 35.628331 146
 
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148 OG 16.165560 -8.189448 38.659830 149 150
 
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149 HG 15.720350 -8.942243 39.055672 148
 
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150 CB 17.545687 -8.376408 38.382876 148 151
 
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151 CA 18.183364 -7.062505 37.961621 146 150 152
 
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152 N 17.926794 -5.993046 38.906589 151 153 154
 
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153 H 17.045394 -5.565197 38.884265 152
 
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154 C 18.934898 -5.574803 39.666679 152 155 156
 
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155 O 20.095420 -5.981969 39.684992 154
 
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156 CA 18.459623 -4.391098 40.493360 154 157
 
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157 N 18.759004 -3.084673 39.940047 156 158 159
 
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158 H 19.447695 -2.558691 40.397716 157
 
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159 C 18.294681 -2.650192 38.771901 157 160 167
 
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160 O 17.400794 -3.202232 38.132255 159
 
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161 ND2 15.355971 -0.323579 38.809144 162 163 164
 
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162 HD22 14.696856 -0.214854 39.526191 161
 
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163 HD21 14.998453 -0.639354 37.953067 161
 
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164 CG 16.657667 -0.068689 38.906860 161 165 166
 
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165 OD1 17.110157 0.389891 39.954658 164
 
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166 CB 17.747092 -0.329476 37.879450 164 167
 
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167 CA 18.825194 -1.285785 38.362770 159 166 168
 
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168 N 19.622577 -1.488204 37.168732 167 169 170
 
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169 H 19.073188 -1.454590 36.357896 168
 
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170 C 20.951385 -1.443561 37.203546 168 171 179
 
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171 O 21.572480 -1.150841 38.224075 170
 
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172 NE2 26.167858 -2.190602 35.347953 173 174 175
 
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173 HE22 27.056978 -2.568232 35.513074 172
 
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174 HE21 25.975409 -1.274889 35.056682 172
 
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175 CD 25.203943 -3.106891 35.362439 172 176 177
 
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176 OE1 25.439587 -4.286905 35.617316 175
 
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177 CG 23.812416 -2.640997 34.966173 175 178
 
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178 CB 22.912159 -2.426953 36.172054 177 179
 
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179 CA 21.583011 -1.759919 35.857661 170 178 180
 
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180 N 21.816516 -0.455431 35.269172 179 181 182
 
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181 H 22.641969 0.034109 35.467663 180
 
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182 C 20.921509 0.209724 34.544268 180 183 188
 
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183 O 19.720225 -0.054577 34.540350 182
 
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184 CG1 19.754956 3.191075 33.750021 185 186
 
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185 CD 19.241351 4.431189 34.504964 184
 
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186 CB 21.082909 2.779299 34.364350 184 187 188
 
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187 CG2 22.108538 3.856510 34.051101 186
 
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188 CA 21.631615 1.413498 33.946650 182 186 189
 
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189 N 21.766498 1.162711 32.524872 188 190 191
 
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190 H 20.963869 1.065942 31.970928 189
 
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191 C 22.982457 0.983176 32.016768 189 192 204
 
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192 O 23.928380 0.487648 32.627199 191
 
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193 CZ3 25.515466 -4.058847 29.074099 194 199
 
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194 CH2 24.520924 -4.998703 28.895199 193 195
 
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195 CZ2 23.207030 -4.805372 29.270351 194 200
 
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196 NE1 21.629324 -3.092418 29.803135 197 198 200
 
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197 HE1 20.714669 -3.437611 29.734674 196
 
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198 CD1 21.726749 -1.791600 29.841013 196 202
 
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199 CE3 25.138047 -2.825695 29.565339 193 201
 
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200 CE2 22.856534 -3.603038 29.850047 195 196 201
 
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201 CD2 23.834591 -2.637879 29.977968 199 200 202
 
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202 CG 23.070009 -1.489783 29.936008 198 201 203
 
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203 CB 23.603771 -0.075134 29.779911 202 204
 
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204 CA 22.950714 1.092747 30.501027 191 203 205
 
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205 N 23.739502 2.239659 30.094876 204 206 207
 
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206 H 24.708965 2.155426 30.211010 205
 
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207 C 23.185580 3.441111 29.958260 205 208 213
 
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208 O 21.965644 3.560148 30.060940 207
 
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209 OG1 24.883478 6.672343 30.691671 210 211
 
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210 HG1 25.486567 7.135017 31.278033 209
 
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211 CB 24.498761 5.350609 31.040137 212 209 213
 
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212 CG2 25.709798 4.719805 31.707885 211
 
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213 CA 24.071922 4.657367 29.744699 207 211 1
 
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214 HT3 22.279527 5.833192 29.502246 1
 
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215 HT2 23.082385 5.419113 28.112900 1
 
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</contents></jmolApplet>
 
  
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<jmolButton><script>spin on</script><name>JmolWiki</name><text>Start spinning</text></jmolButton><jmolButton><script>spin off</script><name>JmolWiki</name><text>Stop spinning</text></jmolButton></jmol></center>
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<center><jmol>
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<jmolApplet>
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<title>Ethanol</title><color>#00DDFF</color>
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<uploadedFileContents>Ethanol.xyz</uploadedFileContents>
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</jmolApplet>
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<jmolMenu>
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<item><text>Start spinning</text><script>spin on</script></item>
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<item><text>Stop spinning</text><script>spin off</script></item>
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<menuHeight>-1</menuHeight>
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</jmolMenu>
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<jmolButton>
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    <script>console</script>
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    <text>open a console window</text>
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</jmolButton>
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</jmol></center>
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<center><jmol><jmolAppletButton><text>Show ethanol in popup window</text><color>gray</color>
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<uploadedFileContents>Ethanol.xyz</uploadedFileContents></jmolAppletButton>
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</jmol></center>
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[[Category:Pages Using Jmol MW Extension]]

Latest revision as of 19:15, 18 January 2025

This page demonstrates a simple use of the Jmol Mediawiki Extension.

There are many more examples, with different options, in MediaWiki/Extension

Ethanol