AtomSets/Popup Menu

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Selection of atom sets from the pop-up menu

Pop-up menu (as of Jmol 11.9.19): Popup select submenu.gif

  • Select
    • Element
      • (list of elements present)
    • Protein (disabled for non-pdb files)
      • By residue name
        • (list of amino acid residues present)
      • (protein subsets)
    • Nucleic (disabled for non-pdb files)
      • By residue name
        • (list of nucleotide residues present)
      • (nucleic subsets)
    • Hetero (disabled for non-pdb files)
      Proposed change to other more friendly term - which one?
      • By HETATM
        Proposed change to 'By group name'
        • (list of hetero groups present)
      • All PDB "HETATM" - applies script select hetero
        Proposed change to 'All hetero'
      • All solvent - applies script select solvent
      • All water - applies script select water
      • Ligand - applies script select ligand, which is the same as select hetero and not solvent
      • Nonaqueous HETATM - applies script select hetero and not water
        Proposed change to 'Nonaqueous hetero'
      • Nonaqueous solvent - applies script select solvent and not water
    • Carbohydrate (disabled for non-pdb files)
      • By residue name
        • (list of monosaccharide residues present)
      • All - applies script select carbohydrate
    • None of the above (disabled for non-pdb files) - applies script select not(hetero,protein,nucleic,carbohydrate)
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