Journals Using Jmol/Elsevier

From Jmol
Jump to navigation Jump to search

Elsevier journals using Jmol in articles

Elsevier Protein Viewer.png

Articles in Elsevier journals (ScienceDirect website) which contain protein identifiers display their structure using a Jmol applet.

The applet and its controls, named Protein Viewer, are displayed alongside the article, in the right hand side panel (see image).

Using the thumbnail menu on top of the viewer, the user can browse through all protein models tagged in the article and interactively explore each of them: scale the model, change background color, experiment with different display and color schemes, apply surface rendering, switch between biological assembly and asymmetric unit and even view structures in a 3D stereo mode. It is also possible to open a larger Protein Viewer in a new window.

Protein structure files used for the interactive visualization in Jmol are obtained from the RCSB Protein Data Bank (PDB).

An example article: doi:10.1016/j.jmb.2012.04.031. Right now, only users with a subscription to the journal are able to view the structures; soon, public view will be available for open-access articles.

List of journals

Appetite Marine Chemistry
Archives in Biochemistry and Biophysics Marine Genomics
BBA Bioenergetics Mechanisms of Ageing and Development
BBA Biomembranes Microvascular Research
BBA General Subjects Molecular and Cellular Endocrinology
BBA Proteins and Proteomics Molecular and Cellular Neuroscience
Behavioural Brain Research Molecular Cell
Biophysical Journal Neurobiology of Disease
Bone Neurobiology of Learning and Memory
Brain Behavior and Immunity Neurochemistry International
Brain Research Neuroimage
Brain Research Bulletin Neuropharmacology
Cell Neuropsychologia
Chemistry and Biology Neuroscience
Current Opinion in Neurobiology Neuroscience Letters
Current Opinion in Structural Biology Neuroscience Research
Developmental Cognitive Neuroscience Peptides
Epilepsy and Behavior Pharmacology
Experimental Eye Research Physiology & Behavior
Experimental Gerontology Progress in Neurobiology
Experimental Neurology Progress in Neuropsychopharmacology & Biological Psychiatry
FEBS Letters Progress in Retinal and Eye Research
General and Comparative Endocrinology Prostaglandins and Other Lipid Mediators
Hearing Research Protein Expression and Purification
International Journal of Developmental Neuroscience Regulatory Peptides
Journal of Chemical Neuroanatomy Steroids
Journal of Molecular and Cellular Cardiology Structure
Journal of Molecular Biology Trends in Biochemical Sciences
Journal of Molecular Graphics and Modelling Vision Research
Journal of Proteomics
Journal of Steroid Biochemistry and Molecular Biology
Journal of Structural Biology