AtomSets/Popup Menu

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Revision as of 17:00, 23 January 2010 by AngelHerraez (talk | contribs) (filling content)
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Selection of atom sets from the pop-up menu

Current pop-up menu (Jmol 11.9.19): Popup select submenu.gif

  • Select
    • Element
      • (list of elements present)
    • Protein (disabled for non-pdb files)
      • By residue name
        • (list of amino acid residues present)
      • (protein subsets)
    • Nucleic (disabled for non-pdb files)
      • By residue name
        • (list of nucleotide residues present)
      • (nucleic subsets)
    • Hetero (disabled for non-pdb files)
      • By HETATM
        • (list of hetero groups present)
      • All PDB "HETATM" - applies script 'select hetero'
      • All solvent - applies script 'select solvent'
      • All water - applies script 'select water'
      • Ligand - applies script 'select ligand', which is the same as 'select hetero and not solvent'
      • Nonaqueous HETATM - applies script 'select hetero and not water'
      • Nonaqueous solvent - applies script 'select solvent and not water'
    • Carbohydrate (disabled for non-pdb files)
      • By residue name
        • (list of monosaccharide residues present)
      • All - applies script 'select carbohydrate'
    • None of the above (disabled for non-pdb files) - applies script 'select not(hetero,protein,nucleic,carbohydrate)'

Contributors

AngelHerraez