Difference between revisions of "Rendering"

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Rendering in Jmol can be needlessly complicated for a beginner, or one who is used to simple Chime scripting. The Jmol menu isn't much help, because it offers standard schemes under the Style submenu, but doesn't provide them in scripting!
 
Rendering in Jmol can be needlessly complicated for a beginner, or one who is used to simple Chime scripting. The Jmol menu isn't much help, because it offers standard schemes under the Style submenu, but doesn't provide them in scripting!
  
 
To help with that, here's the way the standard styles (from the Jmol menu) may be rendered in Jmol script; the script elements are shown in quotation marks:
 
To help with that, here's the way the standard styles (from the Jmol menu) may be rendered in Jmol script; the script elements are shown in quotation marks:
  
Space-filling:  "spacefill 100%;"
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Space-filling:
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  spacefill 100%;
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// or
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spacefill on;
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// or
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spacefill only; // disables all other styles
  
Ball-and-stick: "wireframe 0.2; spacefill 20%;"
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Ball-and-stick:
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wireframe 0.15; spacefill 23%;
  
Stick model: "wireframe 0.3; spacefill 0;"
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Stick model:  
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wireframe 0.3; spacefill off;
  
Wireframe: "wireframe 0.01; spacefill 0;"
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Wireframe:  
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wireframe 0.01; spacefill 0;
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// or
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wireframe on; spacefill off;
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// or
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wireframe only;  // disables all other styles
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Cartoon (macromolecules only):
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select protein, nucleic;
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cartoon only;
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color cartoon structure;
  
 
A note to Jmol developers: it would be helpful to have a single command within Jmol that would implement the standard Jmol rendering styles!
 
A note to Jmol developers: it would be helpful to have a single command within Jmol that would implement the standard Jmol rendering styles!
 
 
--[[User:BergerBluffton|BergerBluffton]] 18:33, 2 September 2007 (CEST)
 
--[[User:BergerBluffton|BergerBluffton]] 18:33, 2 September 2007 (CEST)

Latest revision as of 14:21, 30 May 2014

Jmol / JSmol Tutorials


Rendering in Jmol can be needlessly complicated for a beginner, or one who is used to simple Chime scripting. The Jmol menu isn't much help, because it offers standard schemes under the Style submenu, but doesn't provide them in scripting!

To help with that, here's the way the standard styles (from the Jmol menu) may be rendered in Jmol script; the script elements are shown in quotation marks:

Space-filling:

spacefill 100%;
// or
spacefill on;
// or
spacefill only; // disables all other styles

Ball-and-stick:

wireframe 0.15; spacefill 23%;

Stick model:

wireframe 0.3; spacefill off;

Wireframe:

wireframe 0.01; spacefill 0;
// or
wireframe on; spacefill off;
// or
wireframe only;  // disables all other styles

Cartoon (macromolecules only):

select protein, nucleic;
cartoon only;
color cartoon structure;

A note to Jmol developers: it would be helpful to have a single command within Jmol that would implement the standard Jmol rendering styles! --BergerBluffton 18:33, 2 September 2007 (CEST)