Colors
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Jmol + JSmol Documentation
- Description of files in Jmol+JSmol distribution
- File formats read or written by Jmol
- The Jmol scripting interface
- Scripting as a programming language
- Complete reference of scripting commands:
- at St Olaf (primary site)
- Loading models directly from databases
- Mouse manual
- Default colors used by Jmol
- Atom sets predefined in Jmol
- Support for bond orders · isotopes · stereochemistry · hydrogen bonds
- Jmol as editor
- Multi-touch support
- Copying and pasting state scripts between applets.
- Backward compatibility (changes of behavior across versions)
- Users mailing list
Default colors used by Jmol
Documentation on colors in Jmol.
Support for isotopes
Common isotopes are recognized by Jmol and colored slightly lighter or darker than the element color:
| isotope | color | color code | script syntax | proposed color |
|---|---|---|---|---|
| 1H | [xFFFFFF] | _1H | ||
| 2H | [xFFFFC0] | _2H, _D, deuterium | ||
| 3H | [xFFFFA0] | _3H, _T, tritium | ||
| 11C | [xD8D8D8] | _11C | new
| |
| 12C | [x909090] | _12C | same
| |
| 13C | [x505050] | _13C | new
| |
| 14C | [x404040] | _14C | same
| |
| 14N | [x3050F8] | _14N | same
| |
| 15N | [x105050] | _15N | new
|
