Difference between revisions of "Wikis Using Jmol"
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Applications of Jmol / JSmol
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| − | {{ | + | {{Jmol_Applications_Sections}} |
| − | Jmol can be embedded in | + | Jmol can be [[Jmol in Wikis | embedded in wiki pages]] using special '''processors''' or '''extensions'''. |
| − | If you know a | + | If you know a wiki which uses Jmol, and which is not in the list below, please add it. |
| − | * [http:// | + | * [http://wiki.jmol.org The Jmol wiki] |
| − | * [http:// | + | * [http://ecoliwiki.net EcoliWiki] |
| − | |||
* [http://www.ch.ic.ac.uk/wiki/index.php/Second_Year_Modelling_Workshop Imperial College London] introductory molecular mechanics modelling course (uses [[MediaWiki]]). | * [http://www.ch.ic.ac.uk/wiki/index.php/Second_Year_Modelling_Workshop Imperial College London] introductory molecular mechanics modelling course (uses [[MediaWiki]]). | ||
| − | * [http://www. | + | * [https://wiki.ch.ic.ac.uk/wiki/index.php?title=Main_Page#Third_Year_Computational_Chemistry_Lab Imperial College London] Advanced molecular modelling course (uses [[MediaWiki]]). |
| − | * [http://wiki. | + | * [http://www.pdbwiki.org PDBwiki] - PDB community annotation |
| + | * [http://proteopedia.org/wiki/ Proteopedia] - a collaborative, 3D encyclopedia of proteins and other molecules. Based on MediaWiki and its Jmol Extension. Uses a simple custom tag for embedding JmolApplet instances. Contains a page for every entry in the PDB (>50,000 pages), with a Jmol view that highlights functional sites and ligands. Offers an easy-to-use scene-authoring tool so you don't have to learn Jmol script language to create customized molecular scenes. Custom scenes are easily attached to "green links" in descriptive text that display those scenes in Jmol. | ||
| + | * [http://www.sklogwiki.org/ SklogWiki] - a wiki for thermodynamics, statistical mechanics, and the computer simulation of materials. | ||
| + | * [http://organicreactions.org OrganicReactions.org] - the ''Organic Reactions'' wiki | ||
Latest revision as of 17:27, 11 August 2025
- Websites Using JSmol
- J(S)mol in the Classroom
- Journals Using JSmol
- J(S)mol Literature
- Articles Using JSmol
- Books Using J(S)mol
- Wikis Using JSmol
- Blogs Using JSmol
- CMS Using JSmol
Course Management Systems / Learning Management Systems / Virtual Learning Environments / e-Learning Platforms / e.g. Moodle - Applications Embedding Jmol
- Distributions Including Jmol
- Blue Obelisk
Jmol can be embedded in wiki pages using special processors or extensions.
If you know a wiki which uses Jmol, and which is not in the list below, please add it.
- The Jmol wiki
- EcoliWiki
- Imperial College London introductory molecular mechanics modelling course (uses MediaWiki).
- Imperial College London Advanced molecular modelling course (uses MediaWiki).
- PDBwiki - PDB community annotation
- Proteopedia - a collaborative, 3D encyclopedia of proteins and other molecules. Based on MediaWiki and its Jmol Extension. Uses a simple custom tag for embedding JmolApplet instances. Contains a page for every entry in the PDB (>50,000 pages), with a Jmol view that highlights functional sites and ligands. Offers an easy-to-use scene-authoring tool so you don't have to learn Jmol script language to create customized molecular scenes. Custom scenes are easily attached to "green links" in descriptive text that display those scenes in Jmol.
- SklogWiki - a wiki for thermodynamics, statistical mechanics, and the computer simulation of materials.
- OrganicReactions.org - the Organic Reactions wiki
