Blue Obelisk

Jmol / JSmol Applications

• Websites Using J(S)mol
• J(S)mol in the Classroom
• Journals Using J(S)mol
• J(S)mol Literature
• Articles Using J(S)mol
• Books Using J(S)mol
• Wikis Using J(S)mol
• Blogs Using J(S)mol
• CMS Using J(S)mol (Moodle and others)
  Course Management Systems, Learning Management Systems, Virtual Learning Environments, e-Learning Platforms
• Applications Embedding Jmol
• Distributions Including Jmol
• Blue Obelisk

The Blue Obelisk

The Blue Obelisk has brought together a group of chemists/programmers/informaticians who find themselves working together using collaborative tools and sharing commonality of vision. They are driven by wanting to do things better, but are frustrated with the Closed systems that chemists currently have to work with. And they express this in code, data, algorithms, specifications, tutorials, demonstrations, articles and anything that helps get the message across.

The Blue Obelisk Chemoinformatics Dictionary

Jmol implements these algorithms in the Blue Obelisk Chemoinformatics Dictionary:

Jmol class	method	dictionary reference
org.jmol.bspt.Bspt		blue-obelisk:rebondFrom3DCoordinates
org.jmol.viewer.Frame		blue-obelisk:convertNotionalIntoCartesianCoordinates
org.jmol.viewer.Frame	convertEuclideanToFractional()	blue-obelisk:convertCartesianIntoFractionalCoordinates
org.jmol.viewer.Frame	convertFractionalToEuclidean()	blue-obelisk:convertFractionIntoCartesianCoordinates

Contributors

NicolasVervelle, AngelHerraez, Pimpim