Websites Using Jmol: A-L

Jmol / JSmol Applications

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Jmol users, please add your (X)HTML website, name beginning A-L, here.

A B C D E F G H I J K L

For Websites M-Z, see Websites Using Jmol.

• 3Dchem.com The Molecule of the Month website from the University of Oxford, now updated to make use of Jmol, showing hundreds of small molecules, inorganic polyhedra and protein structures - Karl Harrison, Oxford, UK.
• 3D Electron Microscopy Data Navigator at Osaka University offers the Yorodumi Viewer, which uses Jmol for electron density maps. Click on the Structure Viewer links to see examples. Note that Jmol can be resized within the page.
• 3D-Structures in Organic Chemistry Models and structures related to teaching basic organic chemistry (DE) - PD Dr. Stefan Immel
• 3D-Structures of Achiral and Chiral Molecules Structures visualizing different types of chirality (DE) - PD Dr. Stefan Immel
• 3D-Structures and Animations in Vibrational Spectroscopy Structures and animations used to visualize vibrational frequencies in IR spectroscopy (DE) - PD Dr. Stefan Immel

• AnchorQuery Specialized pharmacophore search for targeting protein-protein interactions with MCR chemistry. University of Pittsburgh.
• Aptanomics Intranet The Jmol applet is used to explore the structure of molecules in our database. - Aptanomics SA, Lyon, France.
• Apuntes de Biología Molecular by M. Gonzalo Claros - Universidad de Málaga, Málaga (Spain).
• Arduengo Research Group X-ray Structures The Jmol applet is used to depict X-ray structures obtained by the research group of Prof. A.J. Arduengo (Structures entry under Structures Link. - University of Alabama - Tuscaloosa, U.S.A.
• Atlas of Macromolecules is a browsable list of over 150 3D protein or nucleic acid structures, many with snapshots, and each with links for viewing in FirstGlance in JSmol.

• Banco de Datos de Moleculas Interactivas is an undergoing project to provide High School and Higher Education Students and Teachers with tools to develop a throughly chemistry teaching experience.-in Spanish, by Einar Coutin, Universidad de Los Andes (Venezuela).
• Biochemistry for Medical Students--Protein Structure and Function Examples of protein structures relevant to medicine. --Eric Walters, Rosalind Franklin University of Medicine and Science (USA).
• Biomodel Teaching resources and self-guided learning for structure and interaction of biomolecules: amino acids, carbohydrates, stereoisomerism, lipids, lipid bilayer, proteins, nucleic acids, nucleic acid-protein complexes, biopolymers - in Spanish, by Angel Herráez, Universidad de Alcalá (Spain). Also some sections duplicated in English. -- User may choose Jmol or JSmol.
• Biomolecular Explorer 3D designed to give high school biology teachers easy access to interactive 3D structures of biologically significant molecules. Website and CD-ROM.
• Biomolecules at Kenyon Jmol tutorials created by Kenyon College undergraduates.
• BioROM Ayudas para el aprendizaje de bioquímica, biotecnología y biología molecular - Material in Spanish, a collaboration among several universities from Spain and Chile. Website and CD-ROM.
• Biotopics 3-D structures of simple Biological molecules - carbohydrates, lipids, nucleic acids, other compounds of Biological interest.
• BioWiki DokuWiki with Jmol applet - users can place 3D-molecular models anywhere in this wiki easily.
• Browser-linked Chemkin-style thermodynamic database Demo for linking chemical nicknames & structures without altering a legacy database.

M-Z

Websites Using Jmol: M-Z

Contributors

BruceTattershall, EricMartz, AngelHerraez, Perrim, Ceroni, Ituvi