Difference between revisions of "Journals Using Jmol"
Jump to navigation
Jump to search
Jmol / JSmol Applications
AngelHerraez (talk | contribs) (add Mol.BioSyst.) |
AngelHerraez (talk | contribs) (add Biochem.J.) |
||
| Line 3: | Line 3: | ||
* [http://pubs.acs.org/journals/acbcct/ ACS Chemical Biology], from the American Chemical Society (USA), is providing interactive Jmol renderings of structures matching figures in articles (look for ''enhanced objects'' link). | * [http://pubs.acs.org/journals/acbcct/ ACS Chemical Biology], from the American Chemical Society (USA), is providing interactive Jmol renderings of structures matching figures in articles (look for ''enhanced objects'' link). | ||
| + | * [http://www.biochemj.org./bj/ Biochemical Journal] is including interactive Jmol renderings of structures matching figures in articles (look for ''3D interactive structure'' link). First article with this feature (27 June 2007) is "Structures and metal-ion-binding properties of the Ca<sup>2+</sup>-binding helix-loop-helix EF-hand motifs"; [http://www.biochemj.org./bj/405/bj4050199.htm abstract and citation]; [http://www.biochemj.org./bj/405/0199/bj4050199add.htm 3D model] (access is restricted to subscribers). | ||
* [http://journals.iucr.org/ Crystallography Journals Online], the web site for journals of the International Union of Crystallography (IUCr), is using Jmol to visualize published crystal structures: click on any ''3d view'' button on a journal table of contents page, ''e.g.'' [http://journals.iucr.org/c/issues/2007/01/00/issconts.html ''Acta Crystallographica Section C'' (2007) Part 1]. | * [http://journals.iucr.org/ Crystallography Journals Online], the web site for journals of the International Union of Crystallography (IUCr), is using Jmol to visualize published crystal structures: click on any ''3d view'' button on a journal table of contents page, ''e.g.'' [http://journals.iucr.org/c/issues/2007/01/00/issconts.html ''Acta Crystallographica Section C'' (2007) Part 1]. | ||
* [http://www.rsc.org/Publishing/Journals/MB/ Molecular BioSystems], from the Royal Society of Chemistry (UK), provides 3D visualisation of macromolecules in articles, by using [http://firstglance.jmol.org FirstGlance in Jmol] to show the associated PDB file. Links to the 3D images can be found on the ''Electronic Supplementary Information'' (ESI) page of the online article. | * [http://www.rsc.org/Publishing/Journals/MB/ Molecular BioSystems], from the Royal Society of Chemistry (UK), provides 3D visualisation of macromolecules in articles, by using [http://firstglance.jmol.org FirstGlance in Jmol] to show the associated PDB file. Links to the 3D images can be found on the ''Electronic Supplementary Information'' (ESI) page of the online article. | ||
* [http://www.nature.com/nchembio/ Nature Chemical Biology] uses Jmol to display chemical compounds related to articles, in the ''compound data index page'' for a paper. [http://www.nature.com/nchembio/journal/v3/n4/compound/nchembio867_COMP12_3D.html Example]. | * [http://www.nature.com/nchembio/ Nature Chemical Biology] uses Jmol to display chemical compounds related to articles, in the ''compound data index page'' for a paper. [http://www.nature.com/nchembio/journal/v3/n4/compound/nchembio867_COMP12_3D.html Example]. | ||
* [http://www.nature.com/nsmb/ Nature Structural & Molecular Biology] displays new protein structures in [http://firstglance.jmol.org FirstGlance in Jmol]. The debut was February, 2006. See [http://www.nature.com/nsmb/journal/v13/n2/index.html We're Living in a 3D World]. | * [http://www.nature.com/nsmb/ Nature Structural & Molecular Biology] displays new protein structures in [http://firstglance.jmol.org FirstGlance in Jmol]. The debut was February, 2006. See [http://www.nature.com/nsmb/journal/v13/n2/index.html We're Living in a 3D World]. | ||
Revision as of 16:25, 4 July 2007
- Websites Using J(S)mol
- J(S)mol in the Classroom
- Journals Using J(S)mol
- J(S)mol Literature
- Articles Using J(S)mol
- Books Using J(S)mol
- Wikis Using J(S)mol
- Blogs Using J(S)mol
- CMS Using J(S)mol (Moodle and others)
Course Management Systems, Learning Management Systems, Virtual Learning Environments, e-Learning Platforms - Applications Embedding Jmol
- Distributions Including Jmol
- Blue Obelisk
Please, feel free to add here a link to any journal that uses Jmol for publishing molecular structures (e.g. as supplementary materials for articles).
- ACS Chemical Biology, from the American Chemical Society (USA), is providing interactive Jmol renderings of structures matching figures in articles (look for enhanced objects link).
- Biochemical Journal is including interactive Jmol renderings of structures matching figures in articles (look for 3D interactive structure link). First article with this feature (27 June 2007) is "Structures and metal-ion-binding properties of the Ca2+-binding helix-loop-helix EF-hand motifs"; abstract and citation; 3D model (access is restricted to subscribers).
- Crystallography Journals Online, the web site for journals of the International Union of Crystallography (IUCr), is using Jmol to visualize published crystal structures: click on any 3d view button on a journal table of contents page, e.g. Acta Crystallographica Section C (2007) Part 1.
- Molecular BioSystems, from the Royal Society of Chemistry (UK), provides 3D visualisation of macromolecules in articles, by using FirstGlance in Jmol to show the associated PDB file. Links to the 3D images can be found on the Electronic Supplementary Information (ESI) page of the online article.
- Nature Chemical Biology uses Jmol to display chemical compounds related to articles, in the compound data index page for a paper. Example.
- Nature Structural & Molecular Biology displays new protein structures in FirstGlance in Jmol. The debut was February, 2006. See We're Living in a 3D World.
