Difference between revisions of "Wikis Using Jmol"

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{{Jmol_Applications_Sections}}
 
{{Jmol_Applications_Sections}}
Jmol can be embedded in Wiki pages using special Processors. Such a processor is available for [[MediaWiki]], MoniWiki (see [[Jmol Processor]]).
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Jmol can be [[Jmol in Wikis | embedded in wiki pages]] using special '''processors'''.  
  
 
If you know a Wiki which uses Jmol, and which is not in the list below, please add it.
 
If you know a Wiki which uses Jmol, and which is not in the list below, please add it.
 
* [http://wiki.jmol.org The Jmol wiki]
 
* [http://wiki.jmol.org The Jmol wiki]
* [http://wiki.symplus.co.jp/pdb/start_en BioWiki] (based on [http://wiki.splitbrain.org/wiki:dokuwiki DokuWiki])
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* [http://ecoliwiki.net EcoliWiki]
* [http://www.compchemwiki.org Computational Chemistry Wiki]
 
* [http://wiki.splitbrain.org/wiki:dokuwiki DokuWiki] and its [http://wiki.splitbrain.org/plugin:jmol Jmol plugin page]
 
* [http://fahwiki.fahstats.com/index.php?title=Jmol_MediaWiki_Extension Folding Wiki], dedicated Wiki for [http://folding.stanford.edu/ Folding@Home].
 
 
* [http://www.ch.ic.ac.uk/wiki/index.php/Second_Year_Modelling_Workshop Imperial College London] introductory molecular mechanics modelling course (uses [[MediaWiki]]).
 
* [http://www.ch.ic.ac.uk/wiki/index.php/Second_Year_Modelling_Workshop Imperial College London] introductory molecular mechanics modelling course (uses [[MediaWiki]]).
* [http://chemie.skku.ac.kr/wiki/wiki.php/JmolPlugin MoniWiki]
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* [https://wiki.ch.ic.ac.uk/wiki/index.php?title=Main_Page#Third_Year_Computational_Chemistry_Lab Imperial College London] Advanced molecular modelling course (uses [[MediaWiki]]).
* [http://qed.princeton.edu QED Service] at [http://www.princeton.edu Princeton University]
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* [http://www.pdbwiki.org PDBwiki] - PDB community annotation
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* [http://proteopedia.org/wiki/ Proteopedia] - a collaborative, 3D encyclopedia of proteins and other molecules. Based on MediaWiki and its Jmol Extension. Uses a simple custom tag for embedding JmolApplet instances. Contains a page for every entry in the PDB (>50,000 pages), with a Jmol view that highlights functional sites and ligands. Offers an easy-to-use scene-authoring tool so you don't have to learn Jmol script language to create customized molecular scenes. Custom scenes are easily attached to "green links" in descriptive text that display those scenes in Jmol.
 
* [http://www.sklogwiki.org/ SklogWiki] - a wiki for thermodynamics, statistical mechanics, and the computer simulation of materials.
 
* [http://www.sklogwiki.org/ SklogWiki] - a wiki for thermodynamics, statistical mechanics, and the computer simulation of materials.
* [http://www.shef.ac.uk/chemistry/uniwakka/ UniWakka] Jmol demo at University of Sheffield. [http://uniwakka.sf.net/ UniWakka Home].
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* [http://organicreactions.org OrganicReactions.org] - the ''Organic Reactions'' wiki
* [http://www.pdbwiki.org PDBwiki] - PDB community annotation
 

Latest revision as of 20:31, 10 March 2019

Jmol / JSmol Applications

Jmol can be embedded in wiki pages using special processors.

If you know a Wiki which uses Jmol, and which is not in the list below, please add it.

  • The Jmol wiki
  • EcoliWiki
  • Imperial College London introductory molecular mechanics modelling course (uses MediaWiki).
  • Imperial College London Advanced molecular modelling course (uses MediaWiki).
  • PDBwiki - PDB community annotation
  • Proteopedia - a collaborative, 3D encyclopedia of proteins and other molecules. Based on MediaWiki and its Jmol Extension. Uses a simple custom tag for embedding JmolApplet instances. Contains a page for every entry in the PDB (>50,000 pages), with a Jmol view that highlights functional sites and ligands. Offers an easy-to-use scene-authoring tool so you don't have to learn Jmol script language to create customized molecular scenes. Custom scenes are easily attached to "green links" in descriptive text that display those scenes in Jmol.
  • SklogWiki - a wiki for thermodynamics, statistical mechanics, and the computer simulation of materials.
  • OrganicReactions.org - the Organic Reactions wiki